Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq18541 572 1e-158 seq9334 547 5e-151 seq22428 354 6e-93 seq15318 199 3e-46 seq14651 170 1e-37 seq21428 150 1e-31 >seq18541 Length=1048218 Score = 572 bits (634), Expect = 1e-158 Identities = 468/567 (83%), Gaps = 1/567 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 493773 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 493832 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||||||||||| ||| |||||| | |||| ||||||||| | ||||| ||||||| Sbjct 493833 TCAGAAAGAACACCTGGGTATTCTGAGAGAAGTCTGTATTTCTTCAAATCAATTTCTGGA 493892 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| || | Sbjct 493893 AAAAATGTGTCACTTTCAAAGTCCTGCATGATCCTTGTCACAAACAGTTTAAGATGGCCT 493952 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||| Sbjct 493953 GGTTGATTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACT 494012 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||||||||||||||||| || |||||||||||||| |||||||| | ||| ||||| | | Sbjct 494013 TTATTTGCTAATTCTGGTTGCTCGGTAAGTTTTAAGGCATCATCCAGACTTTTAGCAACA 494072 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| |||||| | ||||| ||||| || || ||||| |||||||||||| | Sbjct 494073 AAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTACTAAGAACTACATTAATTCTGTCC 494132 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| || ||||| |||||||| |||||||| ||||| ||||||||||||| | | Sbjct 494133 TTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGA 494192 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCA-TTCTTTGGAAATGTTTAAAATCATT 4445 ||||||||| || ||| ||||| || || |||| || ||||||||| || || ||||| Sbjct 494193 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTTGGAAATACTTGAATTCATT 494252 Query 4446 CATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGC 4505 | | ||| | ||| |||| || || | ||||||||||||||||| || | ||||| Sbjct 494253 CCTGAGTGGGGCCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGGGACACAGC 494312 Query 4506 AACAATGCAGTTTAGTGCTTGAACCAT 4532 || ||||||||||| | ||||||| Sbjct 494313 GACGATGCAGTTTAGCGTACGAACCAT 494339 >seq9334 Length=5112722 Score = 547 bits (606), Expect = 5e-151 Identities = 461/566 (81%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 1725855 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 1725914 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||||||||||| ||| |||||| | |||||||||||||| | ||||| ||||||| Sbjct 1725915 TCAGAAAGAACACCTGGGTATTCTGAGAGAAGTTTGTATTTCTTCAAATCAATTTCTGGA 1725974 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| || | Sbjct 1725975 AAAAATGTGTCACTTTCAAAGTCCTGCATGATCCTTGTCACAAACAGTTTAAGATGGCCT 1726034 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||| Sbjct 1726035 GGTTGATTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACT 1726094 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||| |||||||||||| || ||| |||||||||| |||||||| | ||| ||||| | | Sbjct 1726095 TTATGTGCTAATTCTGGTTGCTCGATAAGTTTTAAGGCATCATCCAGACTTTTAGCAACA 1726154 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| |||||| | ||||| ||||| | || ||||| ||||||||||| | Sbjct 1726155 AAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTATCC 1726214 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| || ||||| |||||||| |||| ||| ||||| || || ||||||| | | Sbjct 1726215 TTTAAAGGTCGATTCTTTTCAGGAATGGAGAGCCAGGTCTTCCTATCCCTAATCACCAGA 1726274 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || | | ||||| || || |||||| ||||||||| || || |||||| Sbjct 1726275 TTCTGTTTACCTTCTGCTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTC 1726334 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | ||| ||||| |||| || || | |||||| |||||| |||||| | ||||| Sbjct 1726335 CTGAGTGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAGTGCCCACGTTTTGGGACACAGCG 1726394 Query 4507 ACAATGCAGTTTAGTGCTTGAACCAT 4532 || ||||||||||| | ||||||| Sbjct 1726395 ACGATGCAGTTTAGCGTACGAACCAT 1726420 >seq22428 Length=10093839 Score = 354 bits (392), Expect = 6e-93 Identities = 309/384 (80%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 4137 AAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGAC 4196 ||||| || ||| | | |||| ||||| ||||| |||||||| ||||| | ||||| || Sbjct 7166679 AAGATGGCCTGGTTGATTCATGGCTTCCTTATAAACAGAACTGCCTCCTACTATCCGAAC 7166738 Query 4197 CATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACT 4256 ||||||||||||||||||||||||||| || || ||||||||||| |||||||| | ||| Sbjct 7166739 CATGTCTACTTTATTTGCTAATTCTGGTTGCTCAGTAAGTTTTAAGGCATCATCCAGACT 7166798 Query 4257 CTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATT 4316 ||||| | ||||||||||| |||| | | ||||| ||||| | || ||||| ||||| Sbjct 7166799 TTTAGCAACAAAATGAGCTCCTTGTGTAGGTTCCTTGAGTTCTCTACTAAGAACTACATT 7166858 Query 4317 AATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCAT 4376 ||||||| | |||||||| || ||||| |||||||| |||||||| ||||| ||| ||| Sbjct 7166859 AATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACTCAT 7166918 Query 4377 AATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTT 4436 |||| | | |||||||||| || ||| ||||| || || |||||| ||||||||| || Sbjct 7166919 AATCGCCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTT 7166978 Query 4437 AAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTG 4496 || |||||| | ||| ||||| |||| || || | ||||||||||||||||| || Sbjct 7166979 GAATTCATTCCTGAGTGGGGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTCTG 7167038 Query 4497 AGCTACAGCAACAATGCAGTTTAG 4520 | ||||| |||||||||||||| Sbjct 7167039 GGACACAGCGACAATGCAGTTTAG 7167062 Score = 215 bits (238), Expect = 4e-51 Identities = 157/182 (86%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 7166173 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 7166232 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | ||||||||||| ||| ||||||| | |||||||||||||| | ||| | ||||||| Sbjct 7166233 TCAGAAAGAACACCTGGGTATTCTAAGAGAAGTTTGTATTTCTTCAAATCCATTTCTGGA 7166292 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| ||||||| ||||||||| | ||||||||| ||||||||||||||||||| || | Sbjct 7166293 AAAAATGTGTCACTTTCAAAGTCCTACATGATCCTTGTCACAAACAGTTTAAGATGGCCT 7166352 Query 4147 GG 4148 || Sbjct 7166353 GG 7166354 >seq15318 Length=11437517 Score = 199 bits (220), Expect = 3e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 4303 CTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAA 4362 || ||||| |||||||||||| | |||||||| || ||||| |||||||| |||||||| Sbjct 10882438 CTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAG 10882379 Query 4363 GTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATT 4422 ||||| ||||||||||||| | |||||||||| || ||| ||||| || || |||||| Sbjct 10882378 GTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 10882319 Query 4423 CTTTGGAAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCA 4482 ||||||||| || || |||||| | ||| ||||| |||| || || | |||||| Sbjct 10882318 TTTTGGAAATACTTGAATTCATTCCTGAGTGGGGGCCAGGGCAGGTCCCCGTTCTTGCCA 10882259 Query 4483 ATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 ||||||||||| || | ||||| | ||||||||||| | ||||||| Sbjct 10882258 ATGCCCATGTTCTGGGACACAGCGATGATGCAGTTTAGCGTACGAACCAT 10882209 >seq14651 Length=8813373 Score = 170 bits (188), Expect = 1e-37 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| |||| | || | | || ||||| || ||||| |||||||| || ||| ||| Sbjct 2253342 AGCTCTTAGGCCACTCGGCGGACGATGGGGGTGACGCAGGTGCAGCCCACGTCCACCAGC 2253401 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | | | || | |||||| || || ||| Sbjct 2253402 ATCTTCTCCAGCCGGAAGGAGTAGGGGCAGTGCTTAGGCTCCCTGCGCAGGACCAGGATC 2253461 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 || || ||||| | ||| ||||||||||||| ||| || ||||| |||||||| || || Sbjct 2253462 TCCTGCTGGATGGCGACAGAGTTCATGTGGTGGTCCACCTTCCCTTCAGCATTGACGCAG 2253521 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||||||| | |||||||| ||||| |||||||||| || | || |||||| Sbjct 2253522 CCCAAGTGGCGACACCTGGCTTCCCAGATCACTGAGGGATATCGCTCAGGGTCCTCATTG 2253581 Query 27171 CG 27172 || Sbjct 2253582 CG 2253583 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||||||||||| || || ||||| |||||||| ||||| | |||||| | | | ||| Sbjct 2254855 TGGAGAGTCCAAGGCGAAGTGGATCTGTTGTAGTAATCTGAGGGCCTTTTGGGATTCGTA 2254914 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTG---TTAGCA 27290 |||| ||| ||||| ||| | | ||| |||||| | || ||| | ||| | || | Sbjct 2254915 TTCCGGTTGAGGATGTTCAGATTGACCTTCACAGTCTTGGGGAAGTTCTTGCCCTCAGTA 2254974 Query 27291 GCTAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTT 27331 | ||||| ||| | |||| ||||| |||| ||| ||| Sbjct 2254975 TTTGGGCATCCTGGATTCTGTGGGCTTGCTATTCCTGCCTT 2255015 >seq21428 Length=20122155 Score = 150 bits (166), Expect = 1e-31 Identities = 109/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 2448645 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGCTAATTCTGGT 2448586 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || |||||||||||||| |||||||| | ||| ||||| | ||||||||||| |||||| Sbjct 2448585 TGCTCGGTAAGTTTTAAGGCATCATCCAGACTTTTAGCAACAAAATGAGCTCCTTGTGGA 2448526 Query 4285 AGCTCC 4290 | ||| Sbjct 2448525 GGTTCC 2448520 Score = 129 bits (142), Expect = 4e-25 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||| ||||||||| | ||||| |||||||||||| ||||||| ||||||||| ||||| Sbjct 2458623 AAGTCTGTATTTCTTCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAAGTCCTGCAT 2458564 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| ||||||||||||||||||| || ||| | | |||| ||||| || Sbjct 2458563 GATCCTTGTCACAAACAGTTTAAGATGGCCTGGTTGATTCATGGCTTCCTT 2458513 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || ||||| |||||||||||| | |||||||| || ||||| ||||| Sbjct 2439327 CTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGG 2439268 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| | |||||||||| || Sbjct 2439267 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 2439219 Score = 105 bits (116), Expect = 5e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | |||||| || || ||| Sbjct 2465699 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACA 2465640 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAA 4056 | ||||||||||| ||| || ||||| ||| Sbjct 2465639 TCAGAAAGAACACCTGGGTA-TCTATAAAA 2465611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361151966440289