Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19918 123 3e-23 seq11110 116 4e-21 seq14041 114 2e-20 seq15174 96.9 4e-15 seq21428 89.7 6e-13 seq14574 87.8 2e-12 >seq19918 Length=441265 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 48804 CTACAACACGTTCTCC 48819 Score = 113 bits (124), Expect = 5e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 113 bits (124), Expect = 5e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 >seq11110 Length=21012544 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1790555 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 1790554 ACCACTCTTTCCCC 1790541 >seq14041 Length=6761596 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1417543 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1419943 Query 53270 CTATTTCTAAGACCGTA 53286 || || || | ||| || Sbjct 1419944 CTGTTGCTTATACCATA 1419960 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 1430282 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 1430341 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 1430342 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 1430401 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 1430402 AGGTTCCAGGTAGAT 1430416 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 1446600 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 1446659 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || || |||| || | || ||| || | Sbjct 1446660 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCCGTTTCAGCAGCCAAAGTATCTA 1446719 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||||||||| || || ||| |||||| |||||||| || ||||| Sbjct 1446720 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 1446765 >seq15174 Length=1580434 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | |||| || || ||| | | ||| |||||| Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAAC--CTCTTTCAGTGTCATCCAAAACTTGAACTTCT 203903 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||||||| | || |||| | | || ||||| || || | ||| || | ||| Sbjct 203902 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTT 203843 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 203842 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 203783 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT 22089 || ||||| ||||| |||||| ||| || Sbjct 203782 TCATCTATGACACCAGCTCCTACATCTAT 203754 >seq21428 Length=20122155 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | |||||||||| | || | || | | || ||||| || || | ||| Sbjct 2236051 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATC 2235992 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 || | ||||| | ||| | | ||| ||| ||||| || | || || | |||||| Sbjct 2235991 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 2235932 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 22089 ||||||||||| ||||| ||||| |||||| ||| || Sbjct 2235931 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTAT 2235893 >seq14574 Length=3519100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | |||||||||| | || | || | | || ||||| || || | ||| Sbjct 1299251 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATC 1299310 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 || | ||||| | ||| | | ||| ||| ||||| || | || || | |||||| Sbjct 1299311 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 1299370 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATC 22086 ||||||||||| ||||| ||||| |||||| ||| Sbjct 1299371 TCTATAATCTTCATCTATGACACCAGCTCCTACATC 1299406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593554326360720