Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1 293 3e-74 seq15318 118 1e-21 >seq1 Length=29265399 Score = 293 bits (324), Expect = 3e-74 Identities = 267/337 (79%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| ||||| | | | | |||| | ||| |||||||||||||| Sbjct 12270928 AGCAGGGCTTCAATGTCTGGCTCGATGTCGATGGTCGGAAAGCAACGGCTGTACCTGCGC 12270987 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||||| |||||||| ||||||||| || ||||| || | |||||||||| Sbjct 12270988 ACAGGCACACCGTCAGGACCCACCAGGAACTTCTCAAAATTCCACGCAATGTCGTTGCGG 12271047 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || |||||| ||| ||||| | ||||||||| Sbjct 12271048 CACACCGGAGACCAGATGATGAACTTGGGGTCAGTCATGAGCGCAGTGGCGTCGTCGCTG 12271107 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| |||||||| || || |||||||| |||||||| || ||| | ||||| || ||| Sbjct 12271108 GGCGCTGGCAGGGCTTCCCGAAGGAAGGCAAAGAGCGGGTGCGCCTTCGCACCATTCACC 12271167 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| || || || |||||||| ||| ||||||||||||| ||| Sbjct 12271168 TCGCACTTCTCGAAGAGAATGAAATTGGGCTCGAACCCGCCGCCAGGACGGACGTACTTG 12271227 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || |||||| | |||| |||||| |||| Sbjct 12271228 AGGGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCT 12271264 Score = 205 bits (226), Expect = 1e-47 Identities = 181/226 (80%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 12271542 CCTGATGCCCAAACTGGTTGCACGGGAAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGC 12271601 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||| ||||| | Sbjct 12271602 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 12271661 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | ||| | ||||||||| || || || | Sbjct 12271662 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCTCAGGCTCACAGGCTCCCCGCCAG 12271721 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGC 83616 | ||||| || |||||||||||||| || |||| | ||||| Sbjct 12271722 CCAGTGGGCGCGCCGAGAAGGCGTACACGGACTGGGTCCCCGCCGC 12271767 >seq15318 Length=11437517 Score = 118 bits (130), Expect = 1e-21 Identities = 203/287 (71%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || | | Sbjct 3222917 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTAC 3222859 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 3222858 TAGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 3222799 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 3222798 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGACCCGCATCAAGCTCATCCGCCACTAC 3222740 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| ||||| |||| ||||| ||| Sbjct 3222739 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGCGTCTGGACTCTGGAGTTCGTGGGC 3222680 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 3222679 AAGCTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3222635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608625279111560