Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-23 seq15374 116 3e-21 seq20429 114 1e-20 seq1558 105 6e-18 seq16418 100 2e-16 seq16296 96.9 3e-15 seq20873 95.1 1e-14 seq15718 87.8 2e-12 >seq1 Length=29265399 Score = 122 bits (134), Expect = 7e-23 Identities = 158/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| || ||||| || || ||||| ||||| | || || | | || Sbjct 23783141 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 23783082 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| ||||| ||| | || || | ||||||||| | ||| | |||||||| || Sbjct 23783081 TCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTC-AGGGGGATCCCTTCCTTATCC 23783023 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | ||| || || | ||||||| |||| ||| |||||| Sbjct 23783022 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 23782963 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || || ||||| ||||||||||||| Sbjct 23782962 TTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGA 23782926 >seq15374 Length=4994092 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| ||||| | || || | | || Sbjct 172895 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 172836 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || | ||||||||| ||| | |||||||| || Sbjct 172835 TCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCC 172776 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | ||| || || | ||||||| |||| ||| |||||| Sbjct 172775 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 172716 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || | || || ||||| ||||||||||||| Sbjct 172715 TTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTTGA 172679 >seq20429 Length=9870158 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||||| |||| ||||||||||| || ||||| ||||| | | Sbjct 2401384 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2401325 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| || || ||| | || || |||||||| || || Sbjct 2401324 AGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGG 2401265 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| || || | ||| || || | |||||| Sbjct 2401264 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACC 2401205 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| ||||||||||| || | || || ||||| || |||||| Sbjct 2401204 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq1558 Length=6673444 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| ||||| | || || | | || Sbjct 2790689 GAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 2790630 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| |||| ||| | || || | |||||| || ||| | ||||||||| || Sbjct 2790629 TTCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATC 2790570 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | || || | | ||||||| |||| ||| ||||| Sbjct 2790569 CTGGATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGT 2790510 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||||||| | || || ||||| ||||||||||||| Sbjct 2790509 CTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGA 2790472 >seq16418 Length=1794168 Score = 100 bits (110), Expect = 2e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | |||||| |||| |||||||| || ||||||| ||||| | Sbjct 1338137 CCGCCTCACAGACAAAGCACCGGGTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAA 1338078 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | ||||||||| ||||||| ||| | || || | | ||||||| ||| Sbjct 1338077 AGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACGCGGCTGGTCGGGGGG- 1338019 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | ||| || |||| ||| || Sbjct 1338018 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGACC 1337959 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 1337958 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA-ATCTGCAT 1337913 >seq16296 Length=2251693 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || |||||||| || |||| Sbjct 936308 CCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAATCCGAA 936367 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || | |||||||||||||||||| || | || || | ||||||||| Sbjct 936368 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACGCTGCTGGTC 936420 >seq20873 Length=9479699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || |||| || || ||| | ||||| | || || | | || Sbjct 8324311 GAGGACCAGGTGCAGGGTCTACTCTTTGTGGATGCTGTAGTCAGAAAGAGTGCGCCCATC 8324370 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC-ACGCCTTCCTTGT 21081 |||||||| ||||| ||| | || || | ||||||||| ||| | |||||| || | Sbjct 8324371 TTCCAGCTGCTTGCCTGCAAAGATGAGCCACTGCTGGTCAGGGGGGGATGCCTTCTTTAT 8324430 Query 21082 CGGCGATCTTTTGT--TTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAAT 21139 | ||||| ||||| | | | ||||||| ||||||| |||| ||| || Sbjct 8324431 CCTGAATCTTGGCCCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGAT 8324490 Query 21140 GGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||||||| | || || ||||| ||||||||||||| Sbjct 8324491 GGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGA 8324531 >seq15718 Length=2773767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | | Sbjct 1504864 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1504923 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || ||||| || ||||| ||| |||| ||||| ||||| || || Sbjct 1504924 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1504983 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | ||||| ||| || Sbjct 1504984 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 1505043 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | | || || ||||| || || | ||||| ||||| || ||||| ||| Sbjct 1505044 TTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTTG 1505094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422143207904924