Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq20429 145 7e-30 seq16418 120 3e-22 seq1558 102 7e-17 seq1 100 2e-16 seq15718 93.3 4e-14 >seq20429 Length=9870158 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 2401367 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 2401308 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || | ||||||||||||||| ||||||||||||||| Sbjct 2401307 CAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTG 2401248 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||||||||||| ||| | || || Sbjct 2401247 GATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTT 2401188 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 2401187 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 2401158 >seq16418 Length=1794168 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||| ||| | || |||||||| |||||||||| ||| | |||| | |||||| Sbjct 1338120 CACCGGGTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTC 1338061 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| |||| || || | || |||||| |||| ||||| || ||||||||||||||| Sbjct 1338060 CAGCCGTTTGCCTGCAAATATCAGACGCGGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTG 1338002 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| |||||| || |||||||| | ||| | || || Sbjct 1338001 GATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTCTT 1337942 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || ||||||||||| Sbjct 1337941 GCCCGTCAGGGTCTTCAC-AAAATCTGCAT 1337913 >seq1558 Length=6673444 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || | ||||||| ||| || Sbjct 2790685 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 2790626 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || | || ||||||| ||||||||||| || || ||||| ||||| || Sbjct 2790625 AGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGG 2790566 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | | || ||||| || ||| ||||| | ||| | || ||| Sbjct 2790565 ATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 2790506 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| || ||||| Sbjct 2790505 CCGGTCAGGGTCTTCACAAAGATTTGCAT 2790477 >seq1 Length=29265399 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | ||||||| ||| || | ||| || || Sbjct 23783126 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCACCTGCTTGCCT 23783067 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| |||||||| || || || || || ||||| || || || ||| Sbjct 23783066 GCAAAGATGAGCCGCTGCTGGTCAGGGGG-ATCCCTTCCTTATCCTGGATCTTGGCTTTC 23783008 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| ||||| | ||| | || ||||||||||| || Sbjct 23783007 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 23782948 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 23782947 TTCACAAAGATTTGCAT 23782931 >seq15718 Length=2773767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 1504863 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1504922 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || || || || ||||| | || || | |||||||| ||||| Sbjct 1504923 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1504982 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || || Sbjct 1504983 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 1505042 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || | || || || || || ||||||||||||||||||||| Sbjct 1505043 CTTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATG 1505091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433711229364988