Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq14096 100 5e-16 >seq14096 Length=10606831 Score = 100 bits (110), Expect = 5e-16 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||| ||||||||||| ||||||||| | || ||||| Sbjct 8593234 GCATTTTTCGGAGCGCAGATGAATTCCTTTATCCATGTGATTATGTACTCATACTATGGG 8593175 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||| ||||||||| ||||||||||| || || || | Sbjct 8593174 TTAACTGCATTTGGCCC-ATGGATTCA-AAAGTATCTTTGGTGGAAACGATACCTGACCA 8593117 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 8593116 TGTTGCAGCTGGT 8593104 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| | || || ||||| || || ||||| || || ||| Sbjct 8595279 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACTGTGTTTTTTATCCTGAGG 8595220 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || ||| ||| || || ||||||||||| | ||| |||||||| | Sbjct 8595219 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 8595160 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| |||| || || || Sbjct 8595159 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 8595125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922936700841560