Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq15374 116 4e-21 seq3447 104 3e-17 seq4447 102 9e-17 seq16785 100 3e-16 seq1558 100 3e-16 seq20873 98.7 1e-15 seq20429 98.7 1e-15 seq14875 84.2 3e-11 >seq1 Length=29265399 Score = 120 bits (132), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| ||||| || ||| || || || ||||| |||| ||||| ||| | Sbjct 23783144 CGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCA 23783085 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||| || || || ||||| ||||||||||| | || | || ||||| Sbjct 23783084 TCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGATCCCT-TCCTTA 23783026 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||| | || | | |||||||| | ||||| || | |||||| Sbjct 23783025 TCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 23782966 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || ||||| ||||||||||||||||| Sbjct 23782965 GTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 >seq15374 Length=4994092 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||| |||| || ||| || || || ||||| |||| ||||| ||| | Sbjct 172899 ACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCC 172840 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || ||||| ||||||||||| | || | | ||||| Sbjct 172839 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTT 172780 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || ||| | || | | |||||||| | ||||| || | ||||| Sbjct 172779 ATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 172720 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || ||||| ||||| ||||||||||| Sbjct 172719 GGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTT 172681 >seq3447 Length=7800117 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 458626 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 458567 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 458566 TACTAACGAGGA 458555 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||||||||||||| |||| |||| |||||||| Sbjct 551921 CTCCTCGTCGGGGAATCGAACCCCAGTCTCCCGCGTGACAAGCGGGGATACCCACCACTA 551980 Query 60126 TACTA 60130 ||||| Sbjct 551981 TACTA 551985 >seq4447 Length=5416924 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 4470979 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 4471038 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 4471039 TATACTAACGAGGA 4471052 >seq16785 Length=2579918 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1357887 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1357828 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1357827 ATACTAACGAGGA 1357815 >seq1558 Length=6673444 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| ||| | || || |||||||| | || || Sbjct 2790668 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAA 2790609 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || ||||| ||| ||| || || | | Sbjct 2790608 GATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 2790549 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||| ||| | ||||| || | |||||||| ||||| || || ||||| || Sbjct 2790548 CTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2790489 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||||||||||||| || Sbjct 2790488 AAAGATTTGCATTTTGAC 2790471 >seq20873 Length=9479699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4471158 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4471217 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4471218 TACTAACGAGGA 4471229 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2440416 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2440475 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2440476 TACTAACGAGGA 2440487 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||| |||| ||||| ||| | || || |||||||| || || || Sbjct 8324332 CTCTTTGTGGATGCTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAA 8324391 Query 43052 TATGAGTCGCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT---TTGA 43107 ||||| | ||||||||| || || | || || || ||| ||| | || | || | Sbjct 8324392 GATGAGCCACTGCTGGTCAGGGGGGGATGCCTTCTTTATCC-TGAATCTTGGCCCCTTCA 8324450 Query 43108 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 || | | || || || | ||||| || | |||||||| ||||| || || |||| Sbjct 8324451 CATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCT 8324510 Query 43168 TTACAAAGATTTGCATTTTTAC 43189 | ||||||||||||||||| || Sbjct 8324511 TCACAAAGATTTGCATTTTGAC 8324532 >seq20429 Length=9870158 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2391310 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2391251 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2391250 TACTAACGAGGA 2391239 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2386598 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2386539 Query 60125 ATACTACCGAGGA 60137 |||||| ||| || Sbjct 2386538 ATACTAACGAAGA 2386526 >seq14875 Length=4817911 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||| ||||||||||||||| |||||||||| | ||||||||| ||| Sbjct 4147532 CTCCCCGTCGGGGAACTGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCGCTA 4147473 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 4147472 TACTAACGAGGAATGA 4147457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571656497538920