Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq21428 100 4e-16 seq15174 100 4e-16 seq14574 95.1 2e-14 seq15718 93.3 6e-14 >seq21428 Length=20122155 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||| | |||| ||||||| | |||| || ||| || | |||| Sbjct 2235834 TTCCTGCTGGATGTTACGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCCAAACATTTTA 2235893 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || || | | Sbjct 2235894 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 2235953 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | |||| | ||| ||| | || | || | || | Sbjct 2235954 TTAATTTTGGCAAAGAAAAGTTTGAAGTAAAAAAAGGTGATTGGATTGCGCAGCTCATTT 2236013 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 2236014 GTGAATGGATTTTTTATCCAGAAAT 2236038 >seq15174 Length=1580434 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||| | |||| ||||||| | |||| || ||| || | |||| Sbjct 203695 TTCCTGCTGGATGTTACGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCCAAACATTTTA 203754 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || || | | Sbjct 203755 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 203814 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | |||| | ||| ||| | || | || | || | Sbjct 203815 TTAATTTTGGCAAAGAAAAGTTTGAAGTAAAAAAAGGTGATCGGATTGCGCAGCTTATTT 203874 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 203875 GTGAACGGATTTTTTATCCAGAAAT 203899 >seq14574 Length=3519100 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| |||| ||||||| |||| || ||| || | |||| Sbjct 1299468 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACATTCTGGCTTGGCTGCCAAACATTTTA 1299409 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||| | |||||||| || || || |||||||||||||||||||| || || || | | Sbjct 1299408 CAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 1299349 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | |||| | ||| ||| | || | || | || | Sbjct 1299348 TTAATTTTGGCAAAGAAAAGTTTGAAGTAAAAAAAGGTGATCGGATTGCGCAGCTCATTT 1299289 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 1299288 GTGAATGGATTTTTTATCCAGAAAT 1299264 >seq15718 Length=2773767 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 1504864 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 1504922 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | ||| || | ||| || ||||||||||||| |||||||||||| ||||| Sbjct 1504923 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1504982 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 1504983 AATTCCTTCCTTATCCTG 1505000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743316920730880