Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20429 113 3e-20 seq1 113 3e-20 seq15374 105 4e-18 seq16418 98.7 6e-16 seq1558 98.7 6e-16 >seq20429 Length=9870158 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 2401369 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2401310 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || |||| |||||| ||| || | || ||||||||| Sbjct 2401309 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCT 2401250 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | ||| | | ||||| || | |||||||| Sbjct 2401249 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 2401190 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 2401189 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2401158 >seq1 Length=29265399 Score = 113 bits (124), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| ||||| || | || |||||||| ||||||||||| || Sbjct 23783156 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 23783097 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||||||||| || ||||||||||||||||| | ||| Sbjct 23783096 AGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTC-AGGGGG 23783038 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||| || ||||| | || | || | ||| | | || || Sbjct 23783037 ATCCCTTCCTTATCCTGGATC-TTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCAC 23782979 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||||||||| ||||| Sbjct 23782978 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 23782931 >seq15374 Length=4994092 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||| | ||| |||||||| | || |||||||| ||||||||||| || || || Sbjct 172902 CAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCG 172843 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | || |||| |||||||||||| || ||||||||||||||||| ||| | | || Sbjct 172842 CCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTC 172783 Query 34291 CTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 ||| || ||| || ||||| | || | || | ||| | | || || |||| | Sbjct 172782 CTTATCCTGGATC-TTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGG 172724 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| ||||| || || || |||||||| || ||||| Sbjct 172723 TGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCAT 172684 >seq16418 Length=1794168 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | |||||| |||| | || |||||| | |||||||||||||| Sbjct 1338137 CCGCCTCACAGACAAAGCACCGGGTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAA 1338078 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| | | |||||||| || || || ||| |||||||| ||| Sbjct 1338077 AGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGACGCGGCTGGTCG-GGGGG 1338019 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| ||||| | | | || | || | | |||||| Sbjct 1338018 ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGAC 1337960 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| || || || |||||||| ||||||||| || Sbjct 1337959 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA-ATCTGCATCTCT 1337909 >seq1558 Length=6673444 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||||||||||| || || || | || Sbjct 2790688 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 2790629 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||| ||| || |||||||||||||| || ||| | || ||||| || Sbjct 2790628 TCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCC 2790569 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || || | | | | | || || |||| |||||||| Sbjct 2790568 TGGATCTTGGCCTTCACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTC 2790509 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||||||||| ||||| Sbjct 2790508 TTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 2790477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322983254039840