Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq19918 98.7 9e-16 seq11110 93.3 4e-14 seq2225 87.8 2e-12 >seq19918 Length=441265 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 48686 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 48745 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 48746 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 48805 Query 16379 AC 16380 || Sbjct 48806 AC 48807 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| |||||||| || || | |||||||||||| ||||| || | Sbjct 50458 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 50517 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | |||||| | || || ||||| Sbjct 50518 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 50572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| |||||||| || || | |||||||||||| ||||| || | Sbjct 63907 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 63966 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | |||||| | || || ||||| Sbjct 63967 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 64021 >seq11110 Length=21012544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | | |||||| | | Sbjct 1797606 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACCGCAAAAC 1797547 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 || || || ||||| || |||||||||||||||||||||| ||| ||||| |||| Sbjct 1797546 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATGTTTT 1797487 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 1797486 CCATAAAATCAAAGGGATTTTCTG 1797463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || || ||||| || || || ||||| || |||| || | Sbjct 1790676 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 1790617 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||||||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 1790616 TCAGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1790557 Query 16377 CAACCAATC 16385 | |||| || Sbjct 1790556 CCACCACTC 1790548 >seq2225 Length=8022615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 ||||| |||| | || ||||| ||||| || || || || || || || || | || Sbjct 9516 TGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 9575 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 | ||||||| || ||||| ||||| | ||| || | ||| || || | |||||| Sbjct 9576 TAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCAAAT 9635 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGC 16377 |||| |||||||| || ||||| ||||||||||| || Sbjct 9636 GAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 9673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462381693025400