Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq20429 132 4e-26 seq15374 105 5e-18 seq1 98.7 8e-16 seq16418 91.5 1e-13 >seq20429 Length=9870158 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | |||| |||||| ||| ||||||||| ||||||||||| Sbjct 2401385 GCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2401326 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| || ||| || |||||||| Sbjct 2401325 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 2401266 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| || ||| ||| || | | | | |||| | ||| || Sbjct 2401265 GATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGAC 2401206 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||||||||| |||||||||||||| ||||| Sbjct 2401205 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2401158 >seq15374 Length=4994092 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||| ||||| ||||||||||| || ||| | || ||| Sbjct 172892 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 172833 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | |||||| ||||| || || | || ||||| ||| Sbjct 172832 AGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGG 172773 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 172772 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 172713 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| ||||||||||| |||||||| ||| Sbjct 172712 CCAGTCAGGGTCTTCACAAAAATTTGCATTTTG 172680 >seq1 Length=29265399 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| ||||| || ||| ||||| ||||||||||| Sbjct 23783156 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 23783097 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| || || || || || || | |||||| ||||| || || Sbjct 23783096 AGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 23783037 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || || || | | | | |||| | ||||||| Sbjct 23783036 TC-CCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 23782978 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || |||||||| ||||| |||||||||||||||||||| ||| Sbjct 23782977 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 23782927 >seq16418 Length=1794168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||| ||| |||||||||||||| || | | | || ||||| | Sbjct 1338114 GTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCG 1338055 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || ||||||| ||| | |||||||| || | ||||||||||| ||||| Sbjct 1338054 TTTGCCTGCAAATATCAGACGCGGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTT 1337996 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | | |||| | || ||||| | ||| || ||||||||||| Sbjct 1337995 GGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTCTTGCCCGT 1337936 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||||||||| || ||||| Sbjct 1337935 CAGGGTCTTCACAAA-ATCTGCAT 1337913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394966675188319