Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq19918 120 3e-22 seq2225 118 1e-21 seq15174 89.7 5e-13 >seq19918 Length=441265 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 48804 CTACAACACGTTCTCC 48819 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 46813 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 46871 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| | ||||| || |||||||||||||| || |||| |||||| ||||| || Sbjct 46872 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTGCAGTGAAATATTCTC 46931 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 46932 CATAAAGTCAAATGGATTT 46950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 50474 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 50533 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | |||||||| Sbjct 50534 GAAGCCATAGAAACAGCGAGCTTCTG 50559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 63923 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 63982 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | |||||||| Sbjct 63983 GAAGCCATAGAAACAGCGAGCTTCTG 64008 >seq2225 Length=8022615 Score = 118 bits (130), Expect = 1e-21 Identities = 298/451 (66%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 |||||||| | || | || ||||| ||||| || | ||||||||||| ||||||||| Sbjct 9513 AGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 9572 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || | ||||||| | ||||||| ||| | ||| || | ||| || |||| || Sbjct 9573 TCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCA 9632 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 ||||| | ||||||||| || || || ||||| ||||| ||| | ||| | Sbjct 9633 AATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTT---GGTAG 9689 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | || | ||||| | |||| ||||| || | || || || | || | Sbjct 9690 GCAGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGC 9749 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGT---ATGTA 14482 | ||||||| || | || | | |||| | ||| ||||||| | |||| Sbjct 9750 AGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCT-------TTGAAATCTTTAATGTG 9802 Query 14483 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14542 || ||||| || |||||||| ||||| ||||||||| | | || || || || ||||| Sbjct 9803 TCCATAAGCAA-CTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAG 9861 Query 14543 AAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTA 14602 ||||| ||||||| || || ||| | || | || || | || ||||| Sbjct 9862 AAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTT 9921 Query 14603 ACTATACCATCACTAGCTGCAAAAAATGCCA 14633 ||| | || ||||| |||||||| || |||| Sbjct 9922 ACTCTGCCGTCACTTGCTGCAAAGAAAGCCA 9952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||||| |||||||| | ||||| || |||||||||||||| || || Sbjct 8654 GACATCACTCCCATTTTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTTCT 8713 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| | ||| ||||||| | |||| |||| Sbjct 8714 TCCAGTGAAACATTCCCCATAAAGTTGAATGAATTT 8749 >seq15174 Length=1580434 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||| ||| || |||||||| |||| |||||| | |||| |||||| |||| Sbjct 203922 CATCCAAAACTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCG 203863 Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760 | | ||||| ||| |||| | | ||| | | ||| ||| ||||| | || ||| | Sbjct 203862 CAATCCGATCACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACAC 203803 Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTAT 11809 ||| || || ||||||||||||||||| || || |||||| |||||| Sbjct 203802 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTAT 203754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482209705156520