Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq15718 86.0 5e-12 seq15374 86.0 5e-12 seq20429 82.4 6e-11 seq1 82.4 6e-11 >seq15718 Length=2773767 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 1504849 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 1504908 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | | |||||||| ||| ||||| ||| | || |||||| Sbjct 1504909 ATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTT 1504968 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 1504969 TGCTGATCAGGAGGAATTCCTTCCTTATC 1504997 >seq15374 Length=4994092 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 172895 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 172836 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || | || || || ||| | ||||||||||| Sbjct 172835 TCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCC 172776 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||| | |||||| || | ||||||| | Sbjct 172775 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 172717 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || ||||||||||||||||| Sbjct 172716 CTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTT 172681 >seq20429 Length=9870158 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 2401369 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2401310 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || ||||| || | ||| ||||| || Sbjct 2401309 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCT 2401250 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||| | ||||||| || | ||||||| | Sbjct 2401249 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 2401190 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| || || ||||| || |||||| Sbjct 2401189 TTGCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq1 Length=29265399 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || ||||| || ||||||||||| | | || | |||| Sbjct 23783141 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 23783082 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || | || || || | ||| | ||||||||||| Sbjct 23783081 TCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTC-AGGGGGATCCCTTCCTTATCC 23783023 Query 18234 GCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||| || | | | ||||| | |||||| || | ||||||| | Sbjct 23783022 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 23782964 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || ||||| ||||||||||| Sbjct 23782963 CTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379239796455555