Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq15374 104 2e-17 seq14041 102 7e-17 seq15718 96.9 3e-15 >seq1 Length=29265399 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| |||||||| || || ||||| ||||| ||||| || |||||| | || || || Sbjct 23782925 ATCAAA-ATGCAAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA 23782983 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || ||||| |||| | || ||| | || ||| |||||||| | || || Sbjct 23782984 GCCCAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCC-CC 23783042 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||||||||||| || || || || ||||| ||| ||||||| ||| | || Sbjct 23783043 TGACCAGCAGCGGCTCATCTTTGCAGGCAAGCAGGTGGAAGATGGGCGCACTCTTTCTGA 23783102 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| ||||| || |||||||| || | |||||||| |||| Sbjct 23783103 CTACAACATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGCCTGAGGGGTGGTA 23783158 >seq15374 Length=4994092 Score = 104 bits (114), Expect = 2e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||||||||| || ||||| ||||| ||||| || |||||| | || || || Sbjct 172678 ATCAAA-ATGCAAATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA 172736 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || ||||| |||| | || ||| | || ||| |||||||| | || || Sbjct 172737 GCCCAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCC 172796 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||||||||||| || || || || ||||| ||| ||||||| ||| | || Sbjct 172797 TGACCAGCAGCGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTGA 172856 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| ||||| || || ||||| || Sbjct 172857 CTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCT 172895 >seq14041 Length=6761596 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || || || ||||| || || || ||||| || || || || Sbjct 1428894 ACCTCATCTTTGCTGGTATATTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 1428953 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| |||||||||||||| || || Sbjct 1428954 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTT 1429013 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 1429014 CCTGTCTCTGTCTGAGACTCAATGATGGC 1429042 >seq15718 Length=2773767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| ||||| ||||| || || ||||| || || ||||| || | |||||||| Sbjct 1505093 AACATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTATCACTCTCAAGGTTGAACCC 1505034 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 1505033 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1504974 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || ||||||| ||| || || || Sbjct 1504973 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 1504914 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 1504913 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 1504873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445640810888880