Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2225 170 2e-37 seq8002 120 4e-22 seq19918 114 2e-20 seq14041 114 2e-20 seq11110 107 2e-18 seq15174 102 1e-16 seq21428 89.7 6e-13 seq14574 87.8 2e-12 >seq2225 Length=8022615 Score = 170 bits (188), Expect = 2e-37 Identities = 312/454 (69%), Gaps = 11/454 (2%) Strand=Plus/Plus Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617 |||| | |||||| |||||| || || || || ||||| | |||||| ||||| ||| Sbjct 9507 TGTACCAGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTA 9566 Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 || | ||| | |||| ||||| |||||| || || | || || ||||| || || Sbjct 9567 ATAAGTTCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATT 9626 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG---GCAATAAGTCTC 33734 || || ||||| | |||||||||||| ||||| ||||| |||||| |||| | || Sbjct 9627 GATGCAAATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTTGG 9686 Query 33735 TCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 | | | | | |||| |||| |||||||| |||||||| || || Sbjct 9687 TAGGC---AGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACG 9743 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33854 ||||||| | |||| ||||| | |||||| | | |||| || ||||||| | Sbjct 9744 CAAGGCAGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCTTTGAAATCTTTA----AT 9799 Query 33855 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33914 || || || || ||||||||| || ||| | ||||||| |||| || || || || Sbjct 9800 GTGTCCAT-AAGCAACTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCA 9858 Query 33915 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33974 |||||||| || || |||||||| |||||| | || || || | | || ||| Sbjct 9859 TAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCA 9918 Query 33975 TTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 || ||| | || ||||| |||||||| || |||| Sbjct 9919 TTTACTCTGCCGTCACTTGCTGCAAAGAAAGCCA 9952 >seq8002 Length=6256634 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| | |||||||| || ||||||||||||| ||| Sbjct 374041 GTTACTTTCTATGATGTCTCTATTGTTCTGCAAGCTTTTATACTGACTACTGCAGTATTT 373982 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| | | |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 373981 CTTGGTTTGACTGCGTATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 373923 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| |||||||| |||||| Sbjct 381469 TGCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGTGCAC 381410 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 381409 ATCCGAATGG 381400 >seq19918 Length=441265 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 33724 C 33724 | Sbjct 48804 C 48804 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 >seq14041 Length=6761596 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1417543 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || ||||| || | | Sbjct 1430282 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 1430341 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 1430342 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 1430401 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||||| ||| || || Sbjct 1430402 AGGTTCCAGGTAGATAGC 1430419 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1419943 Query 62508 CTATTTCTAAGACCGTA 62524 || || || | ||| || Sbjct 1419944 CTGTTGCTTATACCATA 1419960 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || || || || || | || || || || | || || | Sbjct 1424872 CATAGGTTTCATATGGGCCACGCTCCTTGGCCAGGTCGCAGCTGGCTTCCAGAGCTCCAT 1424931 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | |||||| | ||| || || || || ||||| |||| Sbjct 1424932 AATAAATAGTTTCAAAGATTTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGAT 1424991 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 1424992 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 1425051 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 1425052 GTTTATTTGA 1425061 >seq11110 Length=21012544 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| ||||| || ||||| || || | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||||||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1790556 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || ||||||||||||||||||||||| || || | || |||||| Sbjct 1785543 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 1785484 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 ||||| || |||| | | || || ||||| | | || ||| || |||| Sbjct 1785483 TATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 1785435 >seq15174 Length=1580434 Score = 102 bits (112), Expect = 1e-16 Identities = 242/358 (68%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | |||| || || ||| | | ||| |||||| Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAAC--CTCTTTCAGTGTCATCCAAAACTTGAACTTCT 203903 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||||||| | || |||| | | || ||||| || || | ||| || | ||| Sbjct 203902 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTT 203843 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 203842 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 203783 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT-GCCTTTTAGG--GACAGACCAGACCTAGGA 31533 || ||||| ||||| |||||| ||| || | || || | || ||||| | ||| Sbjct 203782 TCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGGA 203723 Query 31534 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGT 31593 |||| ||| || || || ||| | | || ||| |||||||| | ||| || Sbjct 203722 GCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAACAGT 203664 Query 31594 CGTTCTCC--AGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGC 31649 |||||| || || || || ||||| || || || |||| || || || ||||| Sbjct 203663 -TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 203607 >seq21428 Length=20122155 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||| | |||||||||| | || | || | | || ||||| || || | ||| Sbjct 2236051 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATC 2235992 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || | ||||| | |||| | ||| ||| ||||| || | || || | ||||| Sbjct 2235991 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 2235932 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 31505 ||||||||||| ||||| ||||| |||||| ||| || Sbjct 2235931 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTAT 2235893 >seq14574 Length=3519100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||| | |||||||||| | || | || | | || ||||| || || | ||| Sbjct 1299251 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATC 1299310 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || | ||||| | |||| | ||| ||| ||||| || | || || | ||||| Sbjct 1299311 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 1299370 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATC 31502 ||||||||||| ||||| ||||| |||||| ||| Sbjct 1299371 TCTATAATCTTCATCTATGACACCAGCTCCTACATC 1299406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629640156763920