Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq19918 125 7e-24 seq11110 111 1e-19 seq14041 98.7 9e-16 >seq19918 Length=441265 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | |||||||||| ||||||||| || Sbjct 48686 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 48745 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 48746 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 48805 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 48806 ACAACACGTTCTCC 48819 >seq11110 Length=21012544 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | || ||||| | |||| || | Sbjct 1790676 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 1790617 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1790616 TCAGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1790557 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1790556 CCACCACTCTTTCCCC 1790541 >seq14041 Length=6761596 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | || | || Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || |||||||| | ||| || Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTT 1417529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || || || | ||||| || ||||| || || ||||||||| Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 ||||||||||| | | || |||| || || |||||||||||||| || || || Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAG 1419939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468392798994160