Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8002 147 3e-30 seq19918 120 4e-22 seq14041 114 2e-20 seq11110 111 2e-19 seq15174 91.5 2e-13 seq21428 84.2 3e-11 >seq8002 Length=6256634 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| |||||||||||||| ||||||| | ||||| Sbjct 373923 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATACGCAGTCAAACCAAGA 373982 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | | ||||||||||||||||| Sbjct 373983 AATACTGCAGTAGTCAGTATAAAAGCTTGCAGAACAATAGAGACATCATAGAAAGTAAC 374041 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 381400 CCATTCGGATGTGCACACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 381459 Query 9907 TGGAGGAGCACGCGTA 9922 | |||||||| | ||| Sbjct 381460 TCGAGGAGCAGGGGTA 381475 >seq19918 Length=441265 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 36300 C 36300 | Sbjct 48804 C 48804 Score = 113 bits (124), Expect = 6e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 113 bits (124), Expect = 6e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 >seq14041 Length=6761596 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1417543 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1419943 Query 65301 CTATTTCTAAGACCGTA 65317 || || || | ||| || Sbjct 1419944 CTGTTGCTTATACCATA 1419960 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | ||| |||| | Sbjct 1430282 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 1430341 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 1430342 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 1430401 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||||| ||| || || Sbjct 1430402 AGGTTCCAGGTAGATAGC 1430419 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 1446600 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 1446659 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || || |||| || |||| ||| || | Sbjct 1446660 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCCGTTTCAGCAGCCAAAGTATCTA 1446719 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||||||| || || ||| |||||| |||||||| || ||||| Sbjct 1446720 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 1446765 >seq11110 Length=21012544 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||||||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1790556 >seq15174 Length=1580434 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || || ||||| ||| ||| | |||| || || ||| | | ||| |||||| Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAAC--CTCTTTCAGTGTCATCCAAAACTTGAACTTCT 203903 Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017 | | |||||||||| | || |||| | | || ||||| || || | ||| || | ||| Sbjct 203902 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTT 203843 Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077 || | || | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 203842 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 203783 Query 34078 TCGTCTATTACACCGCCTCCTATATCAAT-ACCTTTTAGG--GACAGACCAGACCTAGGA 34134 || ||||| ||||| |||||| ||| || | | || || | || ||||| | ||| Sbjct 203782 TCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGGA 203723 Query 34135 GCTATTCTACCATAGCA 34151 |||| ||| || || || Sbjct 203722 GCTACTCTTCCGTAACA 203706 >seq21428 Length=20122155 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 33948 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 34007 ||| ||||||| | |||||||||| | || | || | | || ||||| || || | ||| Sbjct 2236051 TTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATC 2235992 Query 34008 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 34067 || | ||||| | || | ||| ||| ||||| || | || || | |||||| Sbjct 2235991 ACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 2235932 Query 34068 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT-ACCTTTTAGG--GACAGACC 34124 ||||||||||| ||||| ||||| |||||| ||| || | | || || | || || Sbjct 2235931 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCC 2235872 Query 34125 AGACCTAGGAGCTATTCTACCATAGCA 34151 ||| | ||||||| ||| || || || Sbjct 2235871 AGAACATGGAGCTACTCTTCCGTAACA 2235845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657987368040760