Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq15651 149 5e-31 seq18541 102 7e-17 seq9334 100 2e-16 seq22428 98.7 8e-16 seq15318 93.3 4e-14 >seq15651 Length=9404055 Score = 149 bits (164), Expect = 5e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| ||||||| ||||| || |||||||||||||||||||| ||||| Sbjct 6566933 AGACCGGTGAGGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 6566992 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || ||||||||||| | |||| |||||||||||||||||||||||| || || Sbjct 6566993 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 6567052 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || || ||||| || | ||||||| ||||| || |||||| Sbjct 6567053 ACATAGAACTGGCAGAGGGCGTGACACGGAGGCAGCGCCATC 6567094 >seq18541 Length=1048218 Score = 102 bits (112), Expect = 7e-17 Identities = 195/284 (69%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || | ||| || ||||| || || ||||| | | Sbjct 494043 TTTAAGGCATCATCCAGACTTTTAGCAACAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 494102 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||| | || | || | ||||||||||| | | ||| || ||||||||||| ||||| Sbjct 494103 TCTTTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAG 494162 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 494163 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTG 494222 Query 3143 GTCA-TTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTT 3201 |||| |||| || |||||| | | ||| || || || | ||| |||| ||||| Sbjct 494223 GTCATTTTTTTGGAAATACTTGAATTCATTCCTGAGTGGGGCCCAGGGCAGGTCCCCGTT 494282 Query 3202 TTTACCAATTCCTAATTGTTC--ATCAACTGCAACGATGCAGTT 3243 || ||||| || | ||||| || || ||||||||||| Sbjct 494283 CTTGCCAATGCCCA--TGTTCTGGGACACAGCGACGATGCAGTT 494324 >seq9334 Length=5112722 Score = 100 bits (110), Expect = 2e-16 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || ||||||||| | ||||| | | ||| ||| ||| || || | | || || Sbjct 1726052 CTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATGTGCTAATTCTGG 1726111 Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 ||| || ||| | || || ||||| || || || | || | ||| || ||||| || | Sbjct 1726112 TTGCTCGATA-AGTTTTAAGGCATCATCCAGACTTTTAGCAACAAAATGAGCTCCTTGTG 1726170 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || | ||||||||| | | | ||| || |||| Sbjct 1726171 GAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCT 1726230 Query 3069 TTTCAGGGATGGAAAACCA--TGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTAC 3126 ||||||| ||||| | ||| | ||| | |||| |||| |||| ||||| || |||| | Sbjct 1726231 TTTCAGGAATGGAGAGCCAGGTCTTCCTATCCC--TAATCACCAGATTCTGTTTACCTTC 1726288 Query 3127 AACCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCA 3186 | || | || | |||||||| || |||||| | | ||| || || || ||||| Sbjct 1726289 TGCTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTCCTGAGTGGGGGCCA 1726348 Query 3187 AGGCATTGTTCCGTTTTTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 |||| ||||| || ||| | || | | || || || ||||||||||| Sbjct 1726349 GGGCAGGTCCCCGTTCTTGCCAGTGCCCACGTTTTGGGACACAGCGACGATGCAGTT 1726405 >seq22428 Length=10093839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || | ||| || ||||| || | ||||| | | Sbjct 7166779 TTTAAGGCATCATCCAGACTTTTAGCAACAAAATGAGCTCCTTGTGTAGGTTCCTTGAGT 7166838 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || | ||||||||||| | | ||| || ||||||||||| ||||| Sbjct 7166839 TCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAG 7166898 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | | |||||| ||| ||||| || |||| | || || | || | Sbjct 7166899 AACCAGGTCTTCCTACTCATAATCGCCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTG 7166958 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||||| || |||||| | | ||| || || || ||||| |||| Sbjct 7166959 GTCATTTTTTGGAAATACTTGAATTCATTCCTGAGTGGGGGCCAGGGCA 7167007 >seq15318 Length=11437517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 3040 ATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCC 3099 ||||||||||| | | ||| || ||||||||||| ||||| ||||| || | | || Sbjct 10882427 ATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACC 10882368 Query 3100 CATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATA 3159 |||||| |||| ||||| || |||| | || || | || | |||||||| || ||||| Sbjct 10882367 CATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATA 10882308 Query 3160 CATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCC 3213 | | | ||| || || || ||||| |||| ||||| || ||||| || Sbjct 10882307 CTTGAATTCATTCCTGAGTGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCC 10882254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427658492472720