Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq20429 109 5e-19 seq15374 96.9 3e-15 seq1 91.5 1e-13 seq1558 89.7 5e-13 seq15718 82.4 8e-11 >seq20429 Length=9870158 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | || ||||| || || ||||| || || Sbjct 2401385 GCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2401326 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || |||||| ||||||| | |||||||||||||| Sbjct 2401325 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 2401266 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| ||| || | | || | |||||| ||||||| || Sbjct 2401265 GATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGAC 2401206 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| |||| || || || || || ||||| Sbjct 2401205 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2401158 >seq15374 Length=4994092 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || || | |||| | Sbjct 172899 ACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCC 172840 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| |||| || || ||||| || || || || ||||| || Sbjct 172839 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTT 172780 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || ||| | | || | |||||| ||||||||||||| | ||| | Sbjct 172779 ATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 172720 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || |||||||| Sbjct 172719 GGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCAT 172684 >seq1 Length=29265399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| | ||||| | ||| || || Sbjct 23783126 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCACCTGCTTGCCT 23783067 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||| || || || || ||||| || || ||| || ||| Sbjct 23783066 GCAAAGATGAGCCGCTGCTGGTCAGGGGG-ATCCCTTCCTTATCCTGGATCTTGGCTTTC 23783008 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 23783007 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 23782948 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 23782947 TTCACAAAGATTTGCAT 23782931 >seq1558 Length=6673444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| | ||||| ||||| || | Sbjct 2790673 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCAT 2790614 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || |||||||| || || |||||||| || || ||| || || Sbjct 2790613 GCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2790554 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | | | |||| | ||||||||||||| | ||| | ||||||||||||| || Sbjct 2790553 ACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2790494 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 2790493 TTCACAAAGATTTGCAT 2790477 >seq15718 Length=2773767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT-GCTCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || || | ||||| || || Sbjct 1504888 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA-TCTTCCAGTTG 1504946 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | ||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 1504947 CTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1505006 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || |||| | || | ||||| || || Sbjct 1505007 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATAGTCTTCCCTGT 1505066 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | |||||||| || || ||||| Sbjct 1505067 AAGGGTTTTTACAAAAATCTGCAT 1505090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495924240168800