Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2225 192 8e-44 seq19918 132 7e-26 seq14041 120 4e-22 seq11110 111 2e-19 seq15174 105 1e-17 seq21428 89.7 7e-13 seq14574 87.8 3e-12 >seq2225 Length=8022615 Score = 192 bits (212), Expect = 8e-44 Identities = 313/446 (70%), Gaps = 11/446 (2%) Strand=Plus/Plus Query 49944 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 50003 |||||| |||||| || || || || ||||| | |||||| ||||| ||||| ||||| Sbjct 9515 ATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTC 9574 Query 50004 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 50063 | | |||| ||||| |||||| || || | || || ||||| || || || ||||| Sbjct 9575 ATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCAAA 9634 Query 50064 TGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAG---GCAACAAGTCTCTCTCCATA 50120 ||| | ||||||||||| ||||| |||||||||||| |||||| || | || Sbjct 9635 TGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTTGGTAGGCA-G 9693 Query 50121 ACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 || | |||| |||| |||||||| |||||||| || || ||||||| Sbjct 9694 CCT--CTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGCAG 9751 Query 50181 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 50240 | |||| ||||| | |||||| | | |||| || ||||||| | || || || Sbjct 9752 CATTTCAATGGCGCTGAAGAGAAATTCCCTTTCTTTGAAATCTTTA----ATGTGTCCAT 9807 Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 || ||||||||| || ||| | ||||||| |||| || || || || |||||||| Sbjct 9808 -AAGCAACTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAGAAACA 9866 Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360 || || |||||||| |||||| | || || || | | || ||||| ||| | Sbjct 9867 GTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTTACTCT 9926 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCA 50386 |||||||| |||||||| || |||| Sbjct 9927 GCCGTCACTTGCTGCAAAGAAAGCCA 9952 >seq19918 Length=441265 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 50102 CAACAA 50107 | |||| Sbjct 48804 CTACAA 48809 Score = 109 bits (120), Expect = 8e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 109 bits (120), Expect = 8e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | ||| || |||||||| |||||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 >seq14041 Length=6761596 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || |||||||||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1417543 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | || Sbjct 1430286 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 1430345 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || |||||||| ||| Sbjct 1430346 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGT 1430405 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 1430406 TCCAGGTAGATAGC 1430419 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || ||||||||||| || || ||||| || || | | |||| Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1419943 Query 79180 CTATTTCTAAGACCGTA 79196 || || || | ||| || Sbjct 1419944 CTGTTGCTTATACCATA 1419960 >seq11110 Length=21012544 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1790555 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 1790554 ACCACTCTTTCCCC 1790541 >seq15174 Length=1580434 Score = 105 bits (116), Expect = 1e-17 Identities = 242/358 (68%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | ||||| || || ||| | | ||| ||||| || Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTC 203901 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | | || ||||| || || | ||| || | ||||| Sbjct 203900 TATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTTAC 203841 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 203840 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 203781 Query 47883 GTCTATTACACCACCTCCTATATC-----AATGCCTTTTAGTGACAGTCCAGACCTAGGA 47937 ||||| |||||| |||||| ||| |||| ||| | || ||||| | ||| Sbjct 203780 ATCTATGACACCAGCTCCTACATCTATAAAATG--TTTGGCAGCCAAGCCAGAACGTGGA 203723 Query 47938 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGT 47997 |||| ||| || || || ||| | | || ||| |||||||| | ||| || Sbjct 203722 GCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAACAGT 203664 Query 47998 CTTTCTCC-TGGA-GGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGC 48053 ||||||| | || || || || ||||| || || || |||| || || || ||||| Sbjct 203663 -TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 203607 >seq21428 Length=20122155 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||| | | ||| ||||| || Sbjct 2236099 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCCAAAACTTGAACTTCTTC 2236040 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || | || | | || ||||| || || | ||| || | ||||| Sbjct 2236039 TATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATCACCTTTTTTTAC 2235980 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 2235979 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 2235920 Query 47883 GTCTATTACACCACCTCCTATATCAAT 47909 ||||| |||||| |||||| ||| || Sbjct 2235919 ATCTATGACACCAGCTCCTACATCTAT 2235893 >seq14574 Length=3519100 Score = 87.8 bits (96), Expect = 3e-12 Identities = 238/358 (66%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || | || ||| | | ||| ||||| || Sbjct 1299203 TCCAGTGGAACCAAAACCTCCTGAACCCCTTCCAGTGTCATCCAAAACTTGAACTTCTTC 1299262 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || | || | | || ||||| || || | ||| || | ||||| Sbjct 1299263 TATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCGATCACCTTTTTTTAC 1299322 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 1299323 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 1299382 Query 47883 GTCTATTACACCACCTCCTATATC-----AATGCCTTTTAGTGACAGTCCAGACCTAGGA 47937 ||||| |||||| |||||| ||| |||| ||| | || ||||| ||| Sbjct 1299383 ATCTATGACACCAGCTCCTACATCTGTAAAATG--TTTGGCAGCCAAGCCAGAATGTGGA 1299440 Query 47938 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGT 47997 |||| ||| ||||| || ||| | | || ||| |||||||| | ||| || Sbjct 1299441 GCTACTCTTCCATAACATCCAGAAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAACAGT 1299499 Query 47998 CTTTCTCC-TGGA-GGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGC 48053 ||||||| | || || || || ||||| || || || |||| || || || |||| Sbjct 1299500 -TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCACAGC 1299556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718066436743960