Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq19918 123 2e-23 seq2225 118 1e-21 seq15174 89.7 5e-13 >seq19918 Length=441265 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 48804 CTACAACACGTTCTCC 48819 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 46813 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 46871 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || |||| |||||| ||||| || Sbjct 46872 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTGCAGTGAAATATTCTC 46931 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 46932 CATAAAGTCAAATGGATTT 46950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 50474 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 50533 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 50534 GAAGCCATAGAAACAGCGAGCTTC 50557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 63923 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 63982 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 63983 GAAGCCATAGAAACAGCGAGCTTC 64006 >seq2225 Length=8022615 Score = 118 bits (130), Expect = 1e-21 Identities = 298/451 (66%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 |||||||| | || | || ||||| ||||| || | ||||||||||| ||||||||| Sbjct 9513 AGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 9572 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || | ||||||| | ||||||| ||| | ||| || | ||| || |||| ||| Sbjct 9573 TCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCA 9632 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 ||||| | ||||||||| || || || ||||| ||||| ||| | ||| | Sbjct 9633 AATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTT---GGTAG 9689 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | || | ||||| | |||| ||||| || | || || || | || | Sbjct 9690 GCAGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGC 9749 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGT---ATGTA 14150 | ||||||| || | || | | ||||| | ||| ||||||| | |||| Sbjct 9750 AGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCT-------TTGAAATCTTTAATGTG 9802 Query 14151 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14210 || ||||| || |||||||| ||||| ||||||||| | | || || || || ||||| Sbjct 9803 TCCATAAGCAA-CTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAG 9861 Query 14211 AAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 || || ||||| | || ||||| | || | || || | || ||||| Sbjct 9862 AAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTT 9921 Query 14271 ACTATACCATCACTAGCTGCAAAAAATGCCA 14301 ||| | || ||||| |||||||| || |||| Sbjct 9922 ACTCTGCCGTCACTTGCTGCAAAGAAAGCCA 9952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||||| |||||||| | ||||| || |||||||||||||| || || Sbjct 8654 GACATCACTCCCATTTTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTTCT 8713 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| | ||| ||||||| | |||| |||| Sbjct 8714 TCCAGTGAAACATTCCCCATAAAGTTGAATGAATTT 8749 >seq15174 Length=1580434 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 11308 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAG 11367 |||| ||| || |||||||| |||| |||||| | |||| |||||| || | Sbjct 203922 CATCCAAAACTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCG 203863 Query 11368 CCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11427 | | |||||| ||| |||| | | ||| | | ||| ||| ||||| | || ||| | Sbjct 203862 CAATCCGATCACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACAC 203803 Query 11428 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTAT 11476 ||| || || ||||||||||||||||| || || |||||| |||||| Sbjct 203802 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTAT 203754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479592842632600