Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq19918 120 3e-22 seq2225 105 6e-18 >seq19918 Length=441265 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 48804 CTACAACACGTTCTCC 48819 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| |||||||| || | |||||||||||||| ||||||||||| || || || || Sbjct 50474 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 50533 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 50534 GAAGCCATAGAAACAGCGAGCTTCTG 50559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| |||||||| || | |||||||||||||| ||||||||||| || || || || Sbjct 63923 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 63982 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 63983 GAAGCCATAGAAACAGCGAGCTTCTG 64008 >seq2225 Length=8022615 Score = 105 bits (116), Expect = 6e-18 Identities = 295/451 (65%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 |||||||| | || | || ||||| ||||| || | ||||||||||| ||||||||| Sbjct 9513 AGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 9572 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || | ||||||| | ||||||| ||| | ||| || | ||| || |||| || Sbjct 9573 TCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCA 9632 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 ||||| | ||||||||| || || || ||||| ||||| ||| | ||| | Sbjct 9633 AATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTT---GGTAG 9689 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || | ||||| |||| ||||| || | || || || | || | Sbjct 9690 GCAGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGC 9749 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGT---ATGTA 13938 | |||| || || |||| | | |||| | ||| ||||||| | |||| Sbjct 9750 AGCATTTCAATGGCGCTGAAGAGAAATTCCCTTTCT-------TTGAAATCTTTAATGTG 9802 Query 13939 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAA 13998 || ||||| || |||||||| ||||| ||||||||| | || || || || ||||| Sbjct 9803 TCCATAAGCAA-CTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAG 9861 Query 13999 AAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTA 14058 ||||| ||||||| || || || | || | || || |||| ||||| Sbjct 9862 AAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTT 9921 Query 14059 ACAATACCATCACTAGCTGCAAAAAATGCCA 14089 || | || ||||| |||||||| || |||| Sbjct 9922 ACTCTGCCGTCACTTGCTGCAAAGAAAGCCA 9952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478453963587960