Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2225 183 4e-41 seq19918 129 8e-25 seq11110 116 5e-21 seq14041 114 2e-20 seq15174 98.7 1e-15 seq21428 89.7 7e-13 >seq2225 Length=8022615 Score = 183 bits (202), Expect = 4e-41 Identities = 310/446 (70%), Gaps = 11/446 (2%) Strand=Plus/Plus Query 42049 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTC 42108 |||||| |||||| || || || || ||||| | |||||||||||| ||||| | ||| Sbjct 9515 ATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTC 9574 Query 42109 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA 42168 | | |||| ||||| |||||| || || | || || ||||| || || || ||||| Sbjct 9575 ATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCAAA 9634 Query 42169 TGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG---GCAATAAGTCTCTCTCCATA 42225 ||| | ||||||||||| ||||| ||||| |||||| |||| | || | | Sbjct 9635 TGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAACATGTTGGTAGGC--- 9691 Query 42226 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 42285 | | | |||| |||| |||||||| |||||||| || || ||||||| Sbjct 9692 AGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGCAG 9751 Query 42286 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGAT 42345 | |||| ||||| | |||||| | | |||| || ||||||| |||| || || Sbjct 9752 CATTTCAATGGCGCTGAAGAGAAATTCCCTTTCTTTGAAATCTTTA----ATGTGTCCAT 9807 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 || ||||||||| || ||| | ||||||| |||| || || || || |||||||| Sbjct 9808 -AAGCAACTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAGAAACA 9866 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTAT 42465 ||| || |||| ||| |||||| | || || || | | || || || ||| | Sbjct 9867 GTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTTACTCT 9926 Query 42466 TCCGTCACTGGCTGCAAAAAACGCCA 42491 |||||||| |||||||| || |||| Sbjct 9927 GCCGTCACTTGCTGCAAAGAAAGCCA 9952 >seq19918 Length=441265 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 42207 C 42207 | Sbjct 48804 C 48804 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | || || |||| ||| |||||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | || || |||| ||| |||||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 |||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| Sbjct 46811 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 46870 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || ||||| || || | || || || || ||||||||||||| || ||| ||||| | Sbjct 46871 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTGCAGTGAAATATTCT 46930 Query 41835 CCATGAAATCAAACGGATT 41853 |||| || ||||| ||||| Sbjct 46931 CCATAAAGTCAAATGGATT 46949 >seq11110 Length=21012544 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||||||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1790556 >seq14041 Length=6761596 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || || || |||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1417543 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1419943 Query 71263 CTATTTCTAAGACCAT 71278 || || || | ||||| Sbjct 1419944 CTGTTGCTTATACCAT 1419959 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | || Sbjct 1430286 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 1430345 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || |||||||| ||| Sbjct 1430346 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGT 1430405 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 1430406 TCCAGGTAGATAGC 1430419 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| | || | || || ||||| || | || |||||||| || |||||| Sbjct 1441071 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAC 1441130 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || | ||||| || || || || || ||||| || | || || || || ||| || Sbjct 1441131 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATC 1441190 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 ||||| | || | ||| ||||||||||| ||||||||| Sbjct 1441191 CCTACGGATACCCTCATCAACATATGCTGTGGTCTTTCA 1441229 >seq15174 Length=1580434 Score = 98.7 bits (108), Expect = 1e-15 Identities = 239/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | ||||| || || ||| | | ||| |||||||| Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTC 203901 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||||||| | || |||| | | || ||||| || || | ||| || | ||||| Sbjct 203900 TATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTTAC 203841 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 203840 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 203781 Query 39978 GTCTATTACACCGCCTCCTATATCAAT-ACCTTTTAGG--GACAGACCAGACCTAGGAGC 40034 ||||| ||||| |||||| ||| || | | || || | || ||||| | ||||| Sbjct 203780 ATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGGAGC 203721 Query 40035 TATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCT 40094 || ||| || || || ||| | | || ||| |||||||| | ||| || | Sbjct 203720 TACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAACAGT-T 203663 Query 40095 TTCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGGC 40148 |||||| | || || || ||||| || || || |||| || || || || || Sbjct 203662 TTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 203607 >seq21428 Length=20122155 Score = 89.7 bits (98), Expect = 7e-13 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||| | | ||| |||||||| Sbjct 2236099 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCCAAAACTTGAACTTCTTC 2236040 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||||||| | || | || | | || ||||| || || | ||| || | ||||| Sbjct 2236039 TATTTCTGGATAAAAAATCCATTCACAAATGAGCTGCGCAATCCAATCACCTTTTTTTAC 2235980 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 2235979 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 2235920 Query 39978 GTCTATTACACCGCCTCCTATATCAAT-ACCTTTTAGG--GACAGACCAGACCTAGGAGC 40034 ||||| ||||| |||||| ||| || | | || || | || ||||| | ||||| Sbjct 2235919 ATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACATGGAGC 2235860 Query 40035 TATTCTACCATAGCA 40049 || ||| || || || Sbjct 2235859 TACTCTTCCGTAACA 2235845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670950114919640