Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq15651 107 1e-18 >seq15651 Length=9404055 Score = 107 bits (118), Expect = 1e-18 Identities = 124/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| ||||| | || || |||||||||||||| || ||||||||||||||| || || Sbjct 6566932 TAGACCGGTGAGGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 6566991 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC 25609 || || | ||||||| | ||||||| |||||| ||||| || || ||||| ||| Sbjct 6566992 CACGCCCAGGCCCATGT-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 6567050 Query 25610 TCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 ||| || ||||| || | || || |||||||| || || || || Sbjct 6567051 CCACATAGAACTGGCAGAGGGCGTGACACGGAGGCAGCGCCATCAG 6567096 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || | ||| Sbjct 6570632 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 6570691 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||| | ||| || ||| ||||| |||||||| ||| ||||||||||| Sbjct 6570692 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCGTC 6570751 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || || ||||| | ||||||||| || Sbjct 6570752 CCAGATTTTGACTCCCTTGGAAGACAGTTCTTTAGCGTTTGTGGATCC 6570799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340044166220847