Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq14430 179 5e-40 seq21317 123 4e-23 >seq14430 Length=2197182 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || ||||||| ||||||||| || || |||| || |||||||||||| Sbjct 1559805 GTCTGGAACAACTGCTCGTCACCCCATTCTGGGTGCTCCTGTTTAAGCACATCGCACACT 1559746 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||| ||||||| |||||||| || ||||||||||| || ||||||||||| ||||| Sbjct 1559745 CGGTTATGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAG 1559686 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || || |||||||| | | Sbjct 1559685 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGGTAGATCATCTCC 1559626 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| |||||| || | ||| || |||| ||| || ||||| |||| Sbjct 1559625 ACCTGAGTATCTTTCACTGTGGGAGGGTACACTTCTCCATCAATGATCT 1559577 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1558636 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1558577 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || || || || ||| |||| || |||||||| | || |||||||||||||| Sbjct 1558576 AAACTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 1558517 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | |||| |||||| |||||||||||| | | | ||| || || | Sbjct 1558516 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAACCTCTTTTGAATCAGGAAGCTC 1558457 Query 10208 ttttttACCTGGTGAACGAGAA 10229 || || |||| || ||||| Sbjct 1558456 CTTCTTCCCTGAAAAATGAGAA 1558435 Score = 107 bits (118), Expect = 3e-18 Identities = 186/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | ||||| |||||||| ||||| ||||| || | |||||||| ||||| | Sbjct 1560405 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCAACGAACTGGGTAAGTCCGTGTTCC 1560346 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | ||||| || ||||| || | ||| | || |||| || | | |||||| | Sbjct 1560345 AGTAGTATAGAGTTGTTATAGA-GAAACTGCTGATAGTTGTATTCCTGATCATCAATTTG 1560287 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| || ||||||| || | ||||||||||| | | |||||||||| | | ||||| Sbjct 1560286 AAAGGCGTCCGGCAGAAGGGGGTGCCAGTGATAGAGCGTGTTAAACTCAGCAGCGATACG 1560227 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 || ||||||||||| | | ||| ||||| || || | |||| || | |||| Sbjct 1560226 GTTCTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 1560168 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || | ||||| ||||| Sbjct 1560167 GATAGCCACTCAAGTGCTGTACATA 1560143 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | || || ||||| || || | Sbjct 1557744 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 1557685 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||| || ||||| |||||||||||| ||| |||||| | ||||| | Sbjct 1557684 TAATAGGAGAGGTTAGAGAATGCTTCCCAGCTTTTGTAGCCGTAGTGTGTATTGTAAGTC 1557625 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| |||||| ||||| Sbjct 1557624 GGTGGACTATCAATCAAATGGGATCTGGCTGAA 1557592 >seq21317 Length=8723464 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| || |||||||| | || || |||||| ||| Sbjct 1656516 AAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 1656575 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| |||||||||||||| |||||||||| ||| | || ||||| || |||||| Sbjct 1656576 CCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTCTCCCCAAAGATG 1656635 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || |||||| | | | || | ||| ||||||| || ||||||||| Sbjct 1656636 GAGTTCGGTAGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 1656695 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || || | || || || || ||| | ||||||| Sbjct 1656696 CCGTACAGCTCCTCCAACTCTGCTGCCATCTCCCTCTCTCCTG 1656738 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| || |||||||| | || || |||||| ||| Sbjct 1662525 AAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 1662584 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| |||||||||||||| |||||||||| ||| | || ||||| || |||||| Sbjct 1662585 CCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTCTCCCCAAAGATG 1662644 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || |||||| | | | || | ||| ||||||| || ||||||||| Sbjct 1662645 GAGTTCGGTAGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 1662704 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || || | || || || || ||| | ||||||| Sbjct 1662705 CCGTACAGCTCCTCCAACTCTGCTGCCATCTCCCTCTCTCCTG 1662747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708325181994160