Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq19918 93.3 4e-14 seq15652 87.8 2e-12 >seq19918 Length=441265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 46807 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 46866 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || |||||||||| || ||| ||| Sbjct 46867 ATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTGCAGTGAAATA 46926 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 46927 TTCTCCATAAAGTCAAATGGATTTTC 46952 >seq15652 Length=1226059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 130686 GCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAATTTTTTGAATCTTCAGAAAAG 130745 ||| | | ||| ||||| || || | | ||||||||||| ||| |||||||||||| Sbjct 1095825 GCTTCTAGTGAGGTACAGAAAGTTTGACTGAATGTCCAATTCCTTGTGTCTTCAGAAAAG 1095884 Query 130746 TAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGGCAAGTAACA 130793 ||||| |||||| ||||||||||||||| | | |||||| ||| || Sbjct 1095885 TAAAAACATTTACTTCCAAATCCAATCCAGCTTTCTGGGCAGGTAGCA 1095932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531750943598360