Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq20429 105 6e-18 seq15374 86.0 5e-12 >seq20429 Length=9870158 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || || || | || ||| |||| |||||| ||| Sbjct 2401157 AATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 2401216 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| |||||| ||||| || ||||| ||||||||||| Sbjct 2401217 CGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCA 2401276 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | || ||||| || ||||||| Sbjct 2401277 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATG 2401314 >seq15374 Length=4994092 Score = 86.0 bits (94), Expect = 5e-12 Identities = 126/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 23972 TACTTTTTAGCCAAA-CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTA 24030 ||||||| | | | | |||||||||| | ||||| || || | ||||| || | || | Sbjct 172664 TACTTTTAAACTAGATCAAAATGCAAATTTTTGTGAAGACCCTGACTGGCAAGACCATCA 172723 Query 24031 CCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 24090 || | || || ||| ||| ||||||||||||| | || ||| ||||| || || | Sbjct 172724 CCCTGGAGGTGGAGCCCAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGG 172783 Query 24091 AAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||| || || || || || ||| | || || | | |||||||| || ||||||| Sbjct 172784 AAGGGATCCCCCCTGACCAGCAGCGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATG 172840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429817899133545