Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq20429 104 2e-17 seq1 102 7e-17 seq15374 96.9 3e-15 seq1558 82.4 6e-11 >seq20429 Length=9870158 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||| | || ||| | || Sbjct 2401369 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2401310 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || |||| ||| || || ||| | |||||| ||||| Sbjct 2401309 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCT 2401250 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||||| |||||| || | |||||||| Sbjct 2401249 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGG 2401192 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || || ||||| ||||||||| Sbjct 2401191 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq1 Length=29265399 Score = 102 bits (112), Expect = 7e-17 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| || ||||| || || ||||||||||| | | || | || Sbjct 23783142 CAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 23783083 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||||||| |||| || || | || || || || Sbjct 23783082 TTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGT-CAGGGGGATCCCTTCCTTATC 23783024 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| ||||| | | | ||||||| ||||||| |||| ||||||| Sbjct 23783023 CTGGATCTTGGCT--TTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 23782966 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||||||| || || ||||| || ||||||||| Sbjct 23782965 GTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 23782927 >seq15374 Length=4994092 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | || Sbjct 172896 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 172837 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||||||| ||||| || | || || || || Sbjct 172836 TTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATC 172777 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| ||||| | | | ||||||| ||||||| |||| ||||||| Sbjct 172776 CTGGATCTTGGCT--TTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 172719 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || |||||||| ||||||||| Sbjct 172718 GTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTTG 172680 >seq1558 Length=6673444 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || ||||||||||| | | || | || Sbjct 2790688 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 2790629 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || |||| ||| | || |||||||| || || || | ||| || || || Sbjct 2790628 TCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCC 2790569 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | |||| || ||||||| |||| |||||||| Sbjct 2790568 TGGATCTTGGC--CTTCACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGG 2790511 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| || || ||||| || ||||||||| Sbjct 2790510 TCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 2790473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404976724731610