Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19918 120 4e-22 seq14041 120 4e-22 seq11110 111 2e-19 seq15174 93.3 5e-14 >seq19918 Length=441265 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || || | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 32803 C 32803 | Sbjct 48804 C 48804 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | ||| || |||||||| |||||| | |||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 50587 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | ||| || |||||||| |||||| | |||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 64036 >seq14041 Length=6761596 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1417543 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 1430282 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 1430341 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 1430342 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 1430401 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 1430402 AGGTTCCAGGTAGATAGC 1430419 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1419824 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 1419883 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 1419884 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1419943 Query 62312 CTATTTCTAAGACCGTA 62328 || || || | ||| || Sbjct 1419944 CTGTTGCTTATACCATA 1419960 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 1446600 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 1446659 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || || |||| || |||| ||| || | Sbjct 1446660 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCCGTTTCAGCAGCCAAAGTATCTA 1446719 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||||||| || || ||| |||||| |||||||| || ||||| Sbjct 1446720 GTTCTACCGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 1446765 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || |||||||| ||||||||| Sbjct 1441071 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAC 1441130 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| || || || || ||||| || | || || || || |||||| Sbjct 1441131 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATC 1441190 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 ||||| | || | ||| ||||| ||||| ||||||||| Sbjct 1441191 CCTACGGATACCCTCATCAACATATGCTGTGGTCTTTCA 1441229 >seq11110 Length=21012544 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1790674 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCTTC 1790615 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||||||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1790614 AGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1790556 >seq15174 Length=1580434 Score = 93.3 bits (102), Expect = 5e-14 Identities = 241/358 (67%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 ||| || || ||||| ||| ||| | |||| || || ||| | | ||| |||||| Sbjct 203960 TCCAGTGGAACCAAAACCTGCTGAAC--CTCTTTCAGTGTCATCCAAAACTTGAACTTCT 203903 Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521 | | |||||||||| | || |||| | | || ||||| || || | ||| || | ||| Sbjct 203902 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGCGCAATCCGATCACCTTTTTTT 203843 Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581 || | || | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 203842 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 203783 Query 30582 TCGTCTATTACACCGCCTCCTATATCAAT-GCCTTTTAGG--GACAGACCAGACCTAGGA 30638 || ||||| ||||| |||||| ||| || | || || | || ||||| | ||| Sbjct 203782 TCATCTATGACACCAGCTCCTACATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGGA 203723 Query 30639 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 30698 |||| ||| || || || ||| | | || ||| |||||||| | || || Sbjct 203722 GCTACTCTTCCGTAACATCCAGCAGGAAGAGCTATCTGAATGTCTGTCTTCA-CAACAGT 203664 Query 30699 CTTTCTCC-TGGA-GGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCAGC 30754 ||||||| | || || || || |||||||| || || || | || || || ||||| Sbjct 203663 -TTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 203607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633453482104400