Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2225 141 1e-28 seq19918 105 7e-18 >seq2225 Length=8022615 Score = 141 bits (156), Expect = 1e-28 Identities = 329/489 (67%), Gaps = 18/489 (4%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGG-TGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||||| ||||||| || | || |||||| ||||| | || ||| |||| | ||| || Sbjct 9477 ATTTCTTTTACTCT-CTGCTCGGATGGTTTGTGTACCAGATGTTTGGACATCAGGCAGGC 9535 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| |||||||| || |||| || || || | ||| | ||||| | | Sbjct 9536 AAAGTCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATAGTAAAATGTGAGGTGGG 9594 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | |||||| | |||||||||||| || ||||| ||||| || ||||| || || | Sbjct 9595 GCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCAAATGAACAGGAAAAGAAGATGC 9654 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGT---TCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| || ||||| || ||| | || | |||| || || | Sbjct 9655 CTTCCACTGCGGCAAAGGCTGCAACATGTTGGTAGGCA------GCCTCTTTGTCCCCAG 9708 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||| || |||||||| || || ||||| | ||||| || |||| || ||| | | Sbjct 9709 TCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGCAGCATTTCAATGGCGCTGA 9768 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || | || | || | ||||| | |||| || || | || | |||||| | Sbjct 9769 AGAGAAATTCCCTTTCTTTGAAATCT----TTAATGTGTCCATAAGCA-ACTATACATCT 9823 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 ||||| | | || | | | ||||||||||| || |||||||| ||||| || |||| Sbjct 9824 CAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCT 9883 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 | |||||||| || | ||| || || ||||| ||| | || || |||||||| Sbjct 9884 GAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTTACTCTGCCGTCACTTGCTGCAA 9943 Query 93513 aaaaaGCCA 93521 | ||||||| Sbjct 9944 AGAAAGCCA 9952 >seq19918 Length=441265 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 48704 TCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 48763 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 48764 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 48816 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| ||||| || | ||| ||||||||||||||| | || ||||| Sbjct 50466 GAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 50525 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | |||||| || ||||| |||||||| ||||| | Sbjct 50526 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGC 50585 Query 93473 TCTAC 93477 || || Sbjct 50586 TCCAC 50590 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| ||||| || | ||| ||||||||||||||| | || ||||| Sbjct 63915 GAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 63974 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | |||||| || ||||| |||||||| ||||| | Sbjct 63975 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGC 64034 Query 93473 TCTAC 93477 || || Sbjct 64035 TCCAC 64039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556703911430360