Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16418 123 2e-23 seq20429 105 6e-18 seq15718 96.9 3e-15 seq15374 96.9 3e-15 seq16296 93.3 4e-14 seq14230 89.7 4e-13 >seq16418 Length=1794168 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| ||||| || || || | || || || || |||| ||||| || ||| ||| Sbjct 1337911 AGATGCAGATTTT-GTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAACCCA 1337969 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || | ||||| ||||| |||||||||||||| | ||| ||||| | Sbjct 1337970 GTGACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCA-TCCCCCCGACC 1338028 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | | ||||| |||||||| ||||||| | | |||||| || ||| | ||||| |||| Sbjct 1338029 AGCCGCGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACA 1338088 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||||| ||||| |||||| Sbjct 1338089 ACATTCGGAAAGAGTCCACC 1338108 >seq20429 Length=9870158 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| | Sbjct 2401158 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGC 2401217 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || |||||||||||||| || || |||||||| Sbjct 2401218 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAG 2401277 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | || ||| |||||| | || || |||||| Sbjct 2401278 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2401337 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 2401338 ATCCAGAAGGAGTCCACC 2401355 >seq15718 Length=2773767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| | || || || || ||||||| | || ||| || Sbjct 1505093 AACATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTATCACTCTCAAGGTTGAACCC 1505034 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || ||| Sbjct 1505033 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1504974 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | || ||| | || | || || ||| Sbjct 1504973 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 1504914 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 1504913 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 1504863 >seq15374 Length=4994092 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| || || | || || || || |||| || || ||||| || Sbjct 172681 AAAATGCAAATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 172740 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || | ||| || || || || ||||| || || || || || Sbjct 172741 AGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCTGAC 172800 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | || ||| ||||| | || || ||| Sbjct 172801 CAGCAGCGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACTCTTTCTGACTAC 172860 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| || ||| Sbjct 172861 AACATCCAGAAAGAGTCGACC 172881 >seq16296 Length=2251693 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || ||||| || || || ||||| ||||||| ||||||||| | |||||| |||| Sbjct 936432 GGCATCCCACCTGACCAGCAGCGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCGC 936373 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | || |||||||||||||| ||||| |||||| Sbjct 936372 ACCCTTTCGGATTACAACATTCAGAAAGAGTCCACC 936337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || ||||| || || || ||||| |||||||| ||||||||| | |||||| |||| Sbjct 932806 GGCATCCCACCTGACCAGCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGC 932747 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 ||| | || |||||||||||||| |||| Sbjct 932746 ACCCTTTCGGATTACAACATTCAGAAAG 932719 >seq14230 Length=5615658 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| ||||| |||||||||||||| |||||||| || || || |||| ||||||| Sbjct 3547235 TCAAATCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCAGCAGTGTCTGATATTTG 3547294 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | | |||||| | ||||| || || |||| ||||||||||| ||||| |||| Sbjct 3547295 CAGAGAAACAGCTGAAGGATGGCCACATTCTCTCAAGCTACAACATTCAGAAAGAGTCCA 3547354 Query 22415 CC 22416 || Sbjct 3547355 CC 3547356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419612703210535