Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20429 179 7e-40 seq15374 152 9e-32 seq1 149 1e-30 seq1558 145 1e-29 seq2224 129 1e-24 seq16418 127 4e-24 seq16984 116 7e-21 seq20430 100 5e-16 >seq20429 Length=9870158 Score = 179 bits (198), Expect = 7e-40 Identities = 168/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | ||||||||| Sbjct 2401366 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2401307 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||||||| || || || || || || || ||||| || ||||| ||||||||||| Sbjct 2401306 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGG 2401247 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| |||||||||||| ||| | || || || | ||||||||| || Sbjct 2401246 ATCTTTGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCGACCTCGAGGGTGATGGTCTT 2401188 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| |||||||| || || ||||||||| Sbjct 2401187 GCCCGTCAGGGTCTTCACAAAGATCTGCATT 2401157 >seq15374 Length=4994092 Score = 152 bits (168), Expect = 9e-32 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || || |||||||| |||||||| || || || || || | | Sbjct 172901 AGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGC 172842 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| | || ||||| || || || |||||| Sbjct 172841 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCC 172782 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| || || || |||||||||||| ||| | || || |||| ||| Sbjct 172781 TTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 172723 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || |||||||| || || || |||||| || Sbjct 172722 GATGGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTTG 172680 >seq1 Length=29265399 Score = 149 bits (164), Expect = 1e-30 Identities = 169/223 (76%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| || || || |||||||| |||||||| || || || || || | | Sbjct 23783147 AGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGC 23783088 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| | || ||||| || ||| | |||||| Sbjct 23783087 CCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGA-TCCCTTCC 23783029 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| || || || |||||||||||| ||| | || || |||| ||| Sbjct 23783028 TTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 23782970 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || |||||||| || || || |||||| || Sbjct 23782969 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 23782927 >seq1558 Length=6673444 Score = 145 bits (160), Expect = 1e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || || || || || | ||||||||| Sbjct 2790685 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 2790626 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| | || || ||||| | || || || || || ||||||||||| || || Sbjct 2790625 AGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGG 2790566 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || || |||||||| |||| | || || |||| ||||||||| || Sbjct 2790565 ATCTTGGCCTTCACATTCTTGATGGTGT-TGCTGGGCTCCACCTCCAGGGTGATGGTCTT 2790507 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| || || || |||||| || Sbjct 2790506 GCCGGTCAGGGTCTTCACAAAGATTTGCATTTTG 2790473 >seq2224 Length=17281721 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||||||||||||||||| || || || || | ||||||||| Sbjct 757884 ACCAGGTGCAGGGTTGACTCTTTTTGGATGTTGTAGTCAGAAAGAGCGTGCCCATCTTCC 757943 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || ||| || || || ||||| | || ||||| || || | |||||||| || || Sbjct 757944 AGCTACTTACCTGCAAAGATGAGCCGCTGCTGGTCAGGAGGGGTCCCTTCCTTATCCTGG 758003 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| | ||| |||||||| | || || |||| || |||||| | Sbjct 758004 ATCTTGGCCTTCTCATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGCGATGGTCTCG 758063 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||||||||| |||||||| Sbjct 758064 CCAGTCAGGGTCTTGACGAAAATCTGCAT 758092 >seq16418 Length=1794168 Score = 127 bits (140), Expect = 4e-24 Identities = 148/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| | ||||| || ||||| || || ||||| || | | | || || Sbjct 1338107 GTGGACTCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCT 1338048 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || ||||| || | | |||||||| ||| |||| ||||||||||| || || || ||| Sbjct 1338047 GCAAATATCAGACGCGGCTGGTCGGGGGGA-TGCCCTCCTTGTCTTGGATTTTGGCTTTG 1337989 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| |||||||||||| | ||| || || | ||||||||| || ||||| |||||| Sbjct 1337988 ACGTTCTCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 1337929 Query 68445 TTGACGAATATCTGCAT 68461 || || || |||||||| Sbjct 1337928 TTCAC-AAAATCTGCAT 1337913 >seq16984 Length=22061292 Score = 116 bits (128), Expect = 7e-21 Identities = 157/217 (72%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| | |||||| || ||||||| ||| ||||||| ||| || || | || Sbjct 20914299 GCGCAGGAGCAAGTGCAGGGTGGACTGTTTCTGGATGT-------GGACAGGGTGCGTCC 20914247 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | || ||||| || || || | || || || ||| || |||||||||| Sbjct 20914246 ATCTTCCAGCTATTTCCCAGCAAAGATCAACCTCTGCTGACGGGGGGGGGTGCCTTCCTT 20914187 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGA 68424 |||||| |||||||||||||| ||| ||||||| ||| | || || || | ||||| Sbjct 20914186 GTCTTGGATCTTTGCCTTGACATTCTCAGTGGTGTC-GCTGGGCTCAACCTCGAGGGTGA 20914128 Query 68425 TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || |||||||| || | ||||||| Sbjct 20914127 TGGTCTTGCCAGTCAGGGTCTTCACAGAGCTCTGCAT 20914091 Score = 105 bits (116), Expect = 1e-17 Identities = 144/195 (74%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| | ||||||| || || | || || | ||||||||| Sbjct 20906768 ACCAGGTGCAGGGTGGACTCCT---GGATGTTGTAGTCAGTCAGGGTGCGCCCATCTTCC 20906712 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||||||| | || || | | || || ||||| ||| |||| ||||||| ||| Sbjct 20906711 AGCTGCTTCCCGACAAAGATCAACTTCTGCTGATCGGGGGGA-TGCCCTCCTTGT-TTGG 20906654 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| ||| ||||||| ||| | | || || | ||||||||| || Sbjct 20906653 ATCTTTGCCTTGACATTCTCAGTGGTGTC-GCTGGGCTTGACCTCAAGGGTGATGGTCTT 20906595 Query 68432 TCCCGTGAGGGTCTT 68446 || ||||||| || Sbjct 20906594 GCCGATGAGGGTGTT 20906580 Score = 105 bits (116), Expect = 1e-17 Identities = 144/195 (74%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| | ||||||| || || | || || | ||||||||| Sbjct 20914071 ACCAGGTGCAGGGTGGACTCCT---GGATGTTGTAGTCAGTCAGGGTGCGCCCATCTTCC 20914015 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||||||| | || || | | || || ||||| ||| |||| ||||||| ||| Sbjct 20914014 AGCTGCTTCCCGACAAAGATCAACTTCTGCTGATCGGGGGGA-TGCCCTCCTTGT-TTGG 20913957 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| ||| ||||||| ||| | | || || | ||||||||| || Sbjct 20913956 ATCTTTGCCTTGACATTCTCAGTGGTGTC-GCTGGGCTTGACCTCAAGGGTGATGGTCTT 20913898 Query 68432 TCCCGTGAGGGTCTT 68446 || ||||||| || Sbjct 20913897 GCCGATGAGGGTGTT 20913883 >seq20430 Length=457578 Score = 100 bits (110), Expect = 5e-16 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362 |||||||||| || |||| | || || || ||||| | || || || || | |||||| Sbjct 387555 CCCATCTTCTGGCTACTTCTCAGCAAAGATCAGTCT--GGTGATCAGGAGGGACGCCTTC 387498 Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422 ||||||||| ||| ||||||||| ||| |||||||| | || || || | ||| Sbjct 387497 CTTGTCTTGGCTCTCTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 387438 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 387437 GATGGCCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 387399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921362744409080