Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15374 127 5e-24 seq1 127 5e-24 seq1558 118 3e-21 seq15718 116 9e-21 seq20873 104 6e-17 seq2224 104 6e-17 seq20862 95.1 3e-14 seq7335 89.7 1e-12 seq14874 87.8 4e-12 >seq15374 Length=4994092 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 172874 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAG 172815 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | ||||| ||||| ||||||||||| || |||||||| || Sbjct 172814 ATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTC 172755 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || ||||| ||||| || Sbjct 172754 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 172695 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 172694 AAAATTTGCATTTTG 172680 >seq1 Length=29265399 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 23783120 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAG 23783061 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | ||||| ||||| ||||||||||| || |||||||| || Sbjct 23783060 ATGAGCCGCTGCTGGTCAGG-GGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTC 23783002 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| |||||||| ||||| || Sbjct 23783001 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 23782942 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 23782941 AAGATTTGCATTTTG 23782927 >seq1558 Length=6673444 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || | ||| ||| Sbjct 2790667 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAAG 2790608 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| ||| | ||||| ||||| ||||||||||| || || ||||| || Sbjct 2790607 ATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 2790548 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | | ||| | || || || || ||||| ||||| |||||||| ||||| || Sbjct 2790547 TTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 2790488 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 2790487 AAGATTTGCATTTTG 2790473 >seq15718 Length=2773767 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 1504864 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1504923 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||| ||||| | ||| || || || || ||||| | || ||| | || Sbjct 1504924 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1504983 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 1504984 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 1505043 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| |||||||| || || || || || || |||||||| Sbjct 1505044 TTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 1505090 >seq20873 Length=9479699 Score = 104 bits (114), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| | ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 8324333 TCTTTGTGGATGCTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAG 8324392 Query 288343 ATCAGACGCTGTTGAGAATCTGGG-ATTCCTTCTTTATCCTGGATTTT--CGCTTTCACG 288399 || || | ||| || | ||| || |||||||||||||| || || | | ||||| Sbjct 8324393 ATGAGCCACTGCTGGTCAGGGGGGGATGCCTTCTTTATCCTGAATCTTGGCCCCTTCACA 8324452 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || | || || || || ||||| ||||| |||||||| ||||| Sbjct 8324453 TTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 8324512 Query 288460 ACGAATATCTGCATTATG 288477 || || || |||||| || Sbjct 8324513 ACAAAGATTTGCATTTTG 8324530 >seq2224 Length=17281721 Score = 104 bits (114), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGG--CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGA 288340 ||||||||||| || ||||| | |||||||| || ||||| | | || ||||| | Sbjct 757902 TCTTTTTGGATGTTGTAGTCAGAAAGAGCGTGC--CCATCTTCCAGCTACTTACCTGCAA 757959 Query 288341 AGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 |||| || ||||| || | ||| | ||||| ||||||||||| || || ||| | | Sbjct 757960 AGATGAGCCGCTGCTGGTCAGGAGGGGTCCCTTCCTTATCCTGGATCTTGGCCTTCTCAT 758019 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | || || | || || || || | ||| |||| || ||||| ||||||| Sbjct 758020 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGCGATGGTCTCGCCAGTCAGGGTCTTGA 758079 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 758080 CGAAAATCTGCAT 758092 >seq20862 Length=464634 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| | || |||| ||||| | ||| || || || || ||| Sbjct 291810 TTTTGAATGTTGTAGTCAGATGAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAATATC 291751 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || | || ||| | || |||||||| ||||||||||| || || || || |||||| Sbjct 291750 AGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCT 291691 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 ||| ||| | ||| || | ||| ||||| |||||||| || || || || ||||| Sbjct 291690 GTAGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTCCCCGTAAGGGTTTTTACGAAA 291631 Query 288466 ATCTG 288470 ||||| Sbjct 291630 ATCTG 291626 >seq7335 Length=6127795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 288314 GTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTT 288373 |||| ||||||| ||||| || || ||| |||| || ||| | || ||| ||| Sbjct 5714331 GTCCATCTTCTAGGTGTTTGCCAGCAAAGGTCAGTTTTTGCTGATCAGGAGGAATTTCTT 5714390 Query 288374 CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCG 288433 | |||||||||||||| || |||| || ||||| | ||| | ||| |||| ||| | Sbjct 5714391 CCTTATCCTGGATTTTGGCCTTCATATTGTCTATTGTATCCAGGGGTTCAACTTTGAGAG 5714450 Query 288434 TGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||| || ||||| || || | || | ||| ||||||||| || Sbjct 5714451 TGATGGTTTTCCCTGTAAGGGCTTTTATGAAAATCTGCATTTTG 5714494 >seq14874 Length=8333406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| | || ||||| || |||| ||| Sbjct 1094771 CCACCATGAAGTCTCAACACAAGATGAAGAGTGGTCTCCTTTTGAATGTTATGGTC---- 1094716 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || |||| ||||| | ||| || || || || | ||| | |||| | || | Sbjct 1094715 AAAGTACGTCTATCTTCCAGTTGCTTGCCAGCAAAAACCAGTCTTTGCTGGTCAGGA--- 1094659 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||| ||| | ||| | ||| Sbjct 1094658 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTGTATTGTATCTGAGGGTTCA 1094599 Query 288424 ACTTCGAGCGTGATCGTCTTCCC 288446 || ||||| ||||| |||||||| Sbjct 1094598 ACCTCGAGAGTGATGGTCTTCCC 1094576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179313738296442