Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq15374 116 4e-21 seq1558 100 3e-16 seq3447 95.1 1e-14 seq4447 93.3 5e-14 seq16785 91.5 2e-13 seq20873 89.7 6e-13 seq20429 89.7 6e-13 >seq1 Length=29265399 Score = 120 bits (132), Expect = 3e-22 Identities = 166/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | |||| |||| ||||| || ||| || || || ||||| |||| Sbjct 23783157 ACCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 23783098 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| ||| | || || | |||||| || || || ||||| ||||||||||| | || Sbjct 23783097 AAGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGG 23783038 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| || ||| | || | | |||||||| | ||||| Sbjct 23783037 ATCCCT-TCCTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCAC 23782979 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || || ||||| ||||||||||||||||| Sbjct 23782978 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 23782928 >seq15374 Length=4994092 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| || ||| || || || ||||| |||| ||||| ||| | Sbjct 172899 ACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCC 172840 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||| | || | | ||||| Sbjct 172839 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTT 172780 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || ||| | || | | |||||||| | ||||| || | ||||| Sbjct 172779 ATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 172720 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| ||||| || || ||||| ||||| ||||||||||| Sbjct 172719 GGTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCATTTT 172681 >seq1558 Length=6673444 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| ||||| ||| | || || |||||||| | || || Sbjct 2790668 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAA 2790609 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | || ||||| ||| ||| || || | | Sbjct 2790608 GATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 2790549 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||| ||| | ||||| || | |||||||| ||||| || || ||||| || Sbjct 2790548 CTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2790489 Query 42197 AAAGATTTGCATTTTCAC 42214 ||||||||||||||| || Sbjct 2790488 AAAGATTTGCATTTTGAC 2790471 >seq3447 Length=7800117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 458626 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 458567 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 458566 TACTAACGAGGA 458555 >seq4447 Length=5416924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 4470979 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 4471038 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 4471039 TATACTAACGAGGA 4471052 >seq16785 Length=2579918 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1357887 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1357828 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1357827 ATACTAACGAGGA 1357815 >seq20873 Length=9479699 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4471158 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4471217 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4471218 TACTAACGAGGA 4471229 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||| |||| ||||| ||| | || || |||||||| || || || Sbjct 8324332 CTCTTTGTGGATGCTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAA 8324391 Query 42077 TATGAGTCGCTGCTGGTC-GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT---TTGA 42132 ||||| | ||||||||| || || | || || || ||| ||| | || | || | Sbjct 8324392 GATGAGCCACTGCTGGTCAGGGGGGGATGCCTTCTTTATCC-TGAATCTTGGCCCCTTCA 8324450 Query 42133 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 || | | || || || | ||||| || | |||||||| ||||| || || |||| Sbjct 8324451 CATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCT 8324510 Query 42193 TTACAAAGATTTGCATTTTCAC 42214 | ||||||||||||||||| || Sbjct 8324511 TCACAAAGATTTGCATTTTGAC 8324532 >seq20429 Length=9870158 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2391310 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2391251 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2391250 TACTAACGAGGA 2391239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2386598 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2386539 Query 57066 ATACTACCGAGGA 57078 |||||| ||| || Sbjct 2386538 ATACTAACGAAGA 2386526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543059756583760