Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq15374 136 4e-27 seq1 132 5e-26 seq20873 125 7e-24 seq1558 118 1e-21 seq15718 114 1e-20 seq2224 104 2e-17 seq20862 82.4 8e-11 >seq15374 Length=4994092 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 172880 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCT 172821 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||||||||||||| || || || ||||| || || || || || ||||| Sbjct 172820 GCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTG-GCTTT 172762 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || | || ||||| || | || | ||||||||| |||| || Sbjct 172761 CACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 172702 Query 64426 TTTTACGAAAATTTGCATTTTAAT 64449 || || |||||||||||||| || Sbjct 172701 CTTCACAAAAATTTGCATTTTGAT 172678 >seq1 Length=29265399 Score = 132 bits (146), Expect = 5e-26 Identities = 163/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| || |||||||| || | | |||||| | ||| Sbjct 23783141 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 23783082 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| ||| | ||||||||||||||||| || || || ||||| || || Sbjct 23783081 TCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGG-GGGATCCCTTCCTTATCC 23783023 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | || || | || ||||| || | || | ||| Sbjct 23783022 TGGA-TCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 23782964 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 ||||||||||| || || || || ||||||||||| || Sbjct 23782963 CTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTTGAT 23782925 >seq20873 Length=9479699 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||| | ||||| || ||| |||| || | | |||||| | ||||| ||||||||||| Sbjct 8324327 GTCTACTCTTTGTGGATGCTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCT 8324386 Query 64307 GCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTTGTATTTT--TTGC 64363 ||| | ||||||| ||||||||| ||| || || |||||||| || || || || | Sbjct 8324387 GCAAAGATGAGCCACTGCTGGTCAGGGGGGGATGCCTTCTTTATCCTGAATCTTGGCCCC 8324446 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| ||| | ||||||| || ||||| || | || | |||||||||||||| Sbjct 8324447 TTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGG 8324506 Query 64424 GTTTTTACGAAAATTTGCATTTT 64446 || || || || ||||||||||| Sbjct 8324507 GTCTTCACAAAGATTTGCATTTT 8324529 >seq1558 Length=6673444 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | |||||| | ||||| |||||||||| Sbjct 2790673 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCAT 2790614 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | |||||||||||||| || || || || ||||| || || || || || ||| Sbjct 2790613 GCAAAGATGAGCCGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2790554 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || | | || ||||| || | || | |||||||||||||| || Sbjct 2790553 ACATTCTTGATGGTGTTGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2790494 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || ||||||||||| Sbjct 2790493 TTCACAAAGATTTGCATTTT 2790474 >seq15718 Length=2773767 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 1504863 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1504922 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || |||||||| ||| |||| || | ||||| || ||||| Sbjct 1504923 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1504982 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||||| || || || Sbjct 1504983 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 1505042 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||| | ||||| || || | |||||||| ||||| ||||| || Sbjct 1505043 CTTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTT 1505093 >seq2224 Length=17281721 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||| |||||||| || | | | | || | ||||| |||| ||| || Sbjct 757896 GTTGACTCTTTTTGGATGTTGTAGTCAGAAAGAGCGTGCCCATCTTCCAGCTACTTACCT 757955 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||||||||||||| ||||| | ||||| || || || || || ||| Sbjct 757956 GCAAAGATGAGCCGCTGCTGGTCAGGAGGGGTCCCTTCCTTATCCTGGATCTTGGCCTTC 758015 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | | | ||||| ||| |||| || Sbjct 758016 TCATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGCGATGGTCTCGCCAGTCAGGGTC 758075 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 758076 TTGACGAAAATCTGCAT 758092 >seq20862 Length=464634 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 |||||||||||||| || | || | | ||||| || |||||||| ||| | || Sbjct 291810 TTTTGAATGTTGTAGTCAGATGAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAATATC 291751 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || | ||||| || |||||||||||||| || || || || || ||||||| || Sbjct 291750 AGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCT 291691 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 ||||| || || || | | ||| | |||||| || || | |||||||||||| Sbjct 291690 GTAGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTCCCCGTAAGGGTTTTTACGAAA 291631 Query 64436 ATTTG 64440 || || Sbjct 291630 ATCTG 291626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499504031323160