Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq15718 95.1 9e-15 seq15374 89.7 4e-13 >seq15718 Length=2773767 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 1504864 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1504923 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | || | ||||| | ||| |||||||| | |||| | || || || || Sbjct 1504924 AAAGTATGTC-CATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1504982 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 1504983 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 1505042 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | || || || || ||||| || |||||||||||||| ||||| || Sbjct 1505043 CTTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTT 1505093 >seq15374 Length=4994092 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || |||||||| || ||| | | | | ||||| | || Sbjct 172886 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGC 172827 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | ||||| ||||| || || |||||||| || || ||| Sbjct 172826 TTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTG 172767 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||||| || || || | ||| ||||| || || ||| Sbjct 172766 GCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 172707 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGA 15182 || || || |||||||||||||| ||||| Sbjct 172706 AGGGTCTTCACAAAAATTTGCAT-TTTGA 172679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357293826539615