Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq14430 174 2e-38 >seq14430 Length=2197182 Score = 174 bits (192), Expect = 2e-38 Identities = 173/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||||||||||||||| ||||| || ||||| || |||||||| || Sbjct 1559805 GTCTGGAACAACTGCTCGTCACCCCATTCTGGGTGCTCCTGTTTAAGCACATCGCACACT 1559746 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||| ||||| | |||||| || |||||||||||||| | || ||||| | |||||| Sbjct 1559745 CGGTTATGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAG 1559686 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||| | || || || | || | || | ||| | | Sbjct 1559685 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGGTAGATCATCTCC 1559626 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || ||||| || ||||| || |||| ||| || ||||| Sbjct 1559625 ACCTGAGTATCTTTCACTGTGGGAGGGTACACTTCTCCATCAAT 1559582 Score = 172 bits (190), Expect = 8e-38 Identities = 215/295 (73%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 8881 GAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGT 8940 ||||| || || ||||| ||||||||||| || ||||| |||||||| | || || Sbjct 1561484 GAACGAAGCAAAGGGACAGCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGT 1561425 Query 8941 TTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGA 9000 || | ||| | |||||||| || || || || ||||| || |||||||| | || || Sbjct 1561424 GTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGTCAGGAGA 1561365 Query 9001 GCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCT 9060 || || || |||| || ||||||||||| || || || || | || | ||| | Sbjct 1561364 ACATATAGTATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGT 1561305 Query 9061 CTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGAC 9120 ||||| ||||||||| | ||||| || || || || | | ||||| || || || | Sbjct 1561304 TTCACCAAAGATGGCATCTGGACGAGGCTTCTCTACCAGCAGGCCAGGATATAGCTCCAT 1561245 Query 9121 AGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || | ||| |||||||| ||||||||||| || || ||||||||||||||| Sbjct 1561244 GGCGTCAATGTCACCATAGAGTGCTTCCAACTCCGCGGCCATCTCCTTCTCACCT 1561190 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 1558636 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1558577 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || |||||||| || | || || || ||||||| || |||||||||||||| Sbjct 1558576 AAACTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 1558517 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || || ||| ||||||| || | ||||||| || || Sbjct 1558516 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAACCTCTTTTGAATCAGGAAG 1558460 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || | ||| ||| Sbjct 1557744 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 1557685 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || |||||||||||||| |||||||| || | | ||||| | Sbjct 1557684 TAATAGGAGAGGTTAGAGAATGCTTCCCAGCTTTTGTAGCCGTAGTGTGTATTGTAAGTC 1557625 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||| |||||| Sbjct 1557624 GGTGGACTATCAATCAAATGGGATCTGGCT 1557595 Score = 93.3 bits (102), Expect = 6e-14 Identities = 195/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| ||| | ||||| |||||||| || |||| | |||||| | | || || Sbjct 1560396 CCAGCAATTTGTTTGGTGAATGATTCAACGAACTGGGTAAGTCCGTGTTCCAGTAGTATA 1560337 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || ||||| || | || || | || || | | || | || |||| | || Sbjct 1560336 GAGTTGTTATAGAGAAACTGCTGATAGTTGTATTCCTGATCATCAATTTGAAAGGCGTCC 1560277 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | |||||| | ||||| || || ||||| || || || |||||||||||| Sbjct 1560276 GGCAGAAGGGGGTGCCAGTGATAGAGCGTGTTAAACTCAGCAGCGATACGGTTCTGGTAC 1560217 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 1560216 TGGAATTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 1560159 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | | ||||| ||||| | | || | ||| ||||| || || || || Sbjct 1560158 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTCTCTCCTGT 1560110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723524098682600