Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20429 109 4e-19 seq16418 104 2e-17 seq15374 100 2e-16 seq1 96.9 2e-15 seq16296 84.2 1e-11 seq1558 84.2 1e-11 >seq20429 Length=9870158 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 2401366 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2401307 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | ||||| || | || | ||||||||||| Sbjct 2401306 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGG 2401247 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | || ||| || |||| ||| ||||| | Sbjct 2401246 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCT 2401189 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||||||| Sbjct 2401188 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2401158 >seq16418 Length=1794168 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||| ||||||| ||||| ||||| | | |||| |||||| |||| || |||||| Sbjct 1338101 TCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAAT 1338042 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||| | || | ||||||||||| || || ||||||| Sbjct 1338041 ATCAGACGCGGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTC 1337983 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || || || || | ||| ||||| || ||||| || ||||||||| Sbjct 1337982 TCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACA 1337923 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 1337922 AA-ATCTGCAT 1337913 >seq15374 Length=4994092 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 172874 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAG 172815 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||| ||||| || ||||| ||| || || Sbjct 172814 ATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCAC--AT 172757 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || ||| || || | ||| ||||| || || || || ||||||| Sbjct 172756 TCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 172697 Query 34969 CAAAGATCTGCATATT 34984 |||| || ||||| || Sbjct 172696 CAAAAATTTGCATTTT 172681 >seq1 Length=29265399 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||| ||| || || ||||| Sbjct 23783120 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAG 23783061 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||| ||||| || ||||| ||| || || Sbjct 23783060 ATGAGCCGCTGCTGGTCAGGGGG-ATCCCTTCCTTATCCTGGATCTTGGCTTTCAC--AT 23783004 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || ||| || || | ||| ||||| || || || || ||||||| Sbjct 23783003 TCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 23782944 Query 34969 CAAAGATCTGCATATT 34984 ||||||| ||||| || Sbjct 23782943 CAAAGATTTGCATTTT 23782928 >seq16296 Length=2251693 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || ||||||||| | || |||| ||||||||||| || ||||||| Sbjct 932719 CTTTCTGAATGTTGTAATCCGAAAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATA 932778 Query 34852 TTAGTCGTTGCTGGTC 34867 | || || |||||||| Sbjct 932779 TCAGACGCTGCTGGTC 932794 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||||||||| || ||||||||| | || |||| ||| Sbjct 936326 ACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAATCCGAAAGGGTGCGGCCATCCTCC 936385 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 |||||||| || ||||||| || || |||||||| Sbjct 936386 AGCTGTTTGCCCACAAATATCAGACGCTGCTGGTC 936420 >seq1558 Length=6673444 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | |||| ||| | || |||||||| ||||| ||||| ||| Sbjct 2790703 CCACCCCTCAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 2790644 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || | ||||| || || || ||||| || | || Sbjct 2790643 AGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGG 2790584 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || ||||| || || || || || | | | || ||| | Sbjct 2790583 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTTGATGGTGTTGCTGGGCTCCA 2790526 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || || || || |||||||||||||| ||||| || Sbjct 2790525 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 2790474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324544425077592