Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2225 138 1e-27 seq19918 120 3e-22 seq14041 111 2e-19 seq11110 86.0 7e-12 >seq2225 Length=8022615 Score = 138 bits (152), Expect = 1e-27 Identities = 302/449 (67%), Gaps = 14/449 (3%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||||||| |||||| || ||||| ||||| |||| ||||| ||||| || || | | Sbjct 9513 AGATGTTTGGACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 9572 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 |||| ||||||| | ||||||||||| | ||| || | |||||| || || ||| Sbjct 9573 TCATAGTAAAATGTGAGGTGGGGCATCAGTCCCCATTTCTTGAGCCAGAACATTGATGCA 9632 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 ||||| | |||||||| || ||||| ||||| ||||| || | | | | || Sbjct 9633 AATGAACAGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTGCAA---CATGTTGGTAG 9689 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 ||| || || | | |||| || |||||||| |||||||| || || || ||| Sbjct 9690 GCAGCCTCTTTGTCCCCAGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACGCAAGGC 9749 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT---ATCTTTAACATATGCA 19239 | | || || | | | ||| | || | || ||| | |||||||| | | || Sbjct 9750 AGCATTTCAATGGCGCTGA--AGAGAAATTCCCT-TTCTTTGAAATCTTTAATGTGTCCA 9806 Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 | || |||| ||||| || ||| | || |||| | || || || || || || Sbjct 9807 T-----AAGCAACTATACATCTCAGAAGGTATGTTTTACGTGGCAATTTGGAAGCCATAG 9861 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 ||||| |||||||| ||||| ||||| | || | || ||| | || ||||| Sbjct 9862 AAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTGAAACGCTCCACCCAGTTGTCATTT 9921 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGC 19388 ||| | || ||||| |||||||| || || Sbjct 9922 ACTCTGCCGTCACTTGCTGCAAAGAAAGC 9950 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTT 18673 || ||| ||||||| | ||||||||||||| || | || ||| ||||||||||| | Sbjct 8615 AAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGAACTTGACATCACTCCCATTTTCT 8672 Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT--C 18731 |||||||| | ||||| || |||||||| ||||| ||| | || | || | ||||| | Sbjct 8673 GATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTTCTTCCAGTG--AAACATTCCC 8730 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 |||||| | |||| ||||| | || | | |||||| || ||| Sbjct 8731 CATAAAGTTGAATGAATTTTCTTTTTTTTTTTTTTTTTAGAGTCC 8775 >seq19918 Length=441265 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | || ||||||||||||| ||| | Sbjct 48684 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 48743 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 48744 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 48803 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 48804 CTACAACACGTTCTCC 48819 Score = 114 bits (126), Expect = 1e-20 Identities = 114/146 (78%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 46812 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 46869 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||||||| | ||||| || |||||||| ||||| ||||| | | ||| ||| Sbjct 46870 CTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTGCAGTGAAATATTC 46929 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 46930 TCCATAAAGTCAAATGGATTTTCTAC 46955 >seq14041 Length=6761596 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| |||| Sbjct 1417373 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATAT 1417432 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| ||||||||||| || |||||||| | | || | Sbjct 1417433 TCAAAGACTGGCTTTGATCAATGAATGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1417492 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| |||||||||| ||| || | ||| || || Sbjct 1417493 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 1417541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || |||| || || || || || ||||| || || Sbjct 1419827 TGAAATTCTCCTGACAAGACCCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 1419886 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 1419887 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1419946 Query 47448 TTTCTTACTCCATA 47461 || |||| ||||| Sbjct 1419947 TTGCTTATACCATA 1419960 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| |||| || | | ||| Sbjct 1441092 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTA 1441151 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| || || || ||| || |||| ||||| | ||| ||| Sbjct 1441152 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 1441211 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 1441212 ATATGCTGTGGTCTTTCA 1441229 >seq11110 Length=21012544 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 1785554 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1785498 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421 || ||||||| ||| |||||||| Sbjct 1785497 TGTGAGAGATAAAATATTTCTCATCTGA 1785470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561950432871960