Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq4447 114 2e-20 >seq4447 Length=5416924 Score = 114 bits (126), Expect = 2e-20 Identities = 176/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 197401 CTAAATATCTCAAACGCGACAGATATTGAGAACGTGGCTTGGAACGGCCCTAAAATCGCT 197460 ||||| |||||| | ||||| |||||| |||| | ||||| || |||| || | || Sbjct 5044656 CTAAACATCTCAGGAGACACAGAGATTGAGCACGTCACCTGGAATGGTCCTACAAACACT 5044597 Query 197461 -TTAGCATTTGCCAATCCTAAAG---ACGTTACCATAATGGATAAAAGCTACCAGGGTCG 197516 ||| || || |||| |||| | | ||| | |||| ||||||||||||||||| Sbjct 5044596 CTTATTATG-GCATATCCCAAAGGAAAGATAACCTTCGTGGACAAAAGCTACCAGGGTCG 5044538 Query 197517 TGTCAACATTAGCCAAACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGC 197576 | || | ||| || ||||| ||||||| || ||| ||||| |||| ||||| Sbjct 5044537 ACTAAATACCAGC---TGGAATTACTCCCTGTGCATCAGCAACTTGACCCTGAAAGATGC 5044481 Query 197577 TGGTTCGTATAAGGCCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATT 197636 || | || || ||||| || ||| |||| ||||| ||||| ||||| ||||| |||| Sbjct 5044480 AGGAACTTACAAAGCCCAGATAAACCAAAAGAATTCTCAAGTTACCACTGAGGAGAAATT 5044421 Query 197637 TACTCTG 197643 || ||| Sbjct 5044420 CACCCTG 5044414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701990967082960