Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq4447 178 2e-39 >seq4447 Length=5416924 Score = 178 bits (196), Expect = 2e-39 Identities = 238/326 (73%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| ||||| ||||| ||| |||||||| || || |||||||| ||||| Sbjct 5292793 GTTTCACAAAATAGCTCAACCCCATTGACAGTGAATGGAGTTCTGGGGGAGTCAGTAACT 5292852 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || || || | ||||| | || ||||| | | |||||||||||| | ||| || Sbjct 5292853 CTTACCTTGAAGTTTCCTGAAGGAAAGAAGGTTCATGCCATCACCTGGCTTTGCAATGGA 5292912 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||||||| || || || |||| || || ||||| | |||||| Sbjct 5292913 ACATCTATCGCCTTCATAAAGCCAGATGAAACCAAAAGTCCAACCATCCATGTGACCAAT 5292972 Query 2058 CCGAAACTGGGCA-AGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || ||| |||||| ||||||| | |||||| | ||||||||| | || || |||||||| Sbjct 5292973 CCAAAA-TGGGCAGAGCGACTGAGCTTCACCCCATCCTACTCCTTGCATCTCAGCAACCT 5293031 Query 2117 AGAGA-TGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG 2175 || | ||| |||||| || || ||||| |||| ||| || | |||||| | | | | Sbjct 5293032 -GACAGTGGCAGACACAGGATCTTACAGCGCCCAGATAACCACAGAGACCTCTATGATAG 5293090 Query 2176 TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||||||||||| |||||||||||| Sbjct 5293091 TTTCCAGCTACACTCTGAGGATCTTC 5293116 Score = 158 bits (174), Expect = 2e-33 Identities = 233/326 (71%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGG-AGTCCGTAAC 1936 || || |||| |||| | ||||| ||| |||||||| || || |||| |||| ||||| Sbjct 3615013 GTTTCACAAAGCAGCCCAACCCCATTGACGGTGAATGGAGTTCTGGGGGGAGTCAGTAAC 3615072 Query 1937 ACTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGG 1996 || || || | ||||| | || ||||| |||| |||||| ||||| | ||| || Sbjct 3615073 TCTTACCTTGAAGTTTCCTGAAGGAAAGAAGGTCAATTCCATCGTCTGGCTTTGCAATGG 3615132 Query 1997 CACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAA 2056 || || ||||||| || || || |||| || || ||||| | |||| Sbjct 3615133 AACATCTGTCGCCTTCATAAAGCCAGATGAAACCAAAAGTCCAACCATCCATGTGACCAG 3615192 Query 2057 TCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || ||| ||| ||||| | | |||||| |||||||||||| | || || |||||||| Sbjct 3615193 CCCAAAATGGGGAGAGCGAATGAGCTTCACCCAGTCCTACTCCTTGCATCTCAGCAACCT 3615252 Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGT 2176 |||| |||||| || || |||||||||| ||| || | |||||| | |||| Sbjct 3615253 GACCATGGCAGACACAGGATCTTACAGTGCCCAGATAACCACAGAGACCTC-TATAACAC 3615311 Query 2177 TTC-CAGCTACACGCTGAGGATCTTC 2201 ||| ||||||||| |||||||||||| Sbjct 3615312 TTCACAGCTACACTCTGAGGATCTTC 3615337 Score = 149 bits (164), Expect = 8e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 2232 CACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGAT 2291 |||||| |||| ||| |||| ||| |||||||||||| |||||||| ||||| ||| || Sbjct 5295679 CACAGTGAACTATCTGGGAATAGGACCTGCGAGATCCACCTGACCTGCTCTGTGGAGAAT 5295738 Query 2292 CCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGCGAGCCC 2351 || |||||||| |||| |||| ||| |||||| || | |||||| | || || Sbjct 5295739 CCAAATGACAATGTCTCATTCAGGTGGCAGGCCTCAGGAGGCATACTTCTAAGTGAACCA 5295798 Query 2352 AACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCC 2411 |||||||| | |||||||||||| || |||||| |||| |||||| ||||| || Sbjct 5295799 AACCTCACTATCTCCTGGGACCCTCAAAATTCCAGTGAACAGAGCTACACCTGCATAGCT 5295858 Query 2412 GAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGAAGCTGTG 2461 | ||| | | ||||| | || | | | ||||| |||||||| || || Sbjct 5295859 CAGAACCCCATTGGCAATTTATCCTCCTCTGTCTCTGCCCAGAACCTCTG 5295908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629105907324440