Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq19918 111 2e-19 seq11110 107 2e-18 >seq19918 Length=441265 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 48686 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 48745 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 48746 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 48805 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 48806 ACAACACGT 48814 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | |||||||| || |||| |||| || || || || |||||||||| Sbjct 46857 CATCACTCCCATCCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 46915 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| ||||| |||||||| ||||||||||| Sbjct 46916 GCAGTGAAATATTCTCCATAAAGTCAAATGGATT 46949 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | || ||||||||||| || | ||||||||||||||| || || ||||| || || Sbjct 50468 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 50527 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATC 37543 || || || ||||| ||||| | |||||| | |||| ||||| || Sbjct 50528 AATTTGGAAGCCATAGAAACAGCGAGCTTCTG-TAATCTGAACTTC 50572 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | || ||||||||||| || | ||||||||||||||| || || ||||| || || Sbjct 63917 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 63976 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATC 37543 || || || ||||| ||||| | |||||| | |||| ||||| || Sbjct 63977 AATTTGGAAGCCATAGAAACAGCGAGCTTCTG-TAATCTGAACTTC 64021 >seq11110 Length=21012544 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | || ||||| | |||||| || | Sbjct 1790676 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 1790617 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1790616 TCAGCCAAAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1790557 Query 37318 CTAC 37321 | || Sbjct 1790556 CCAC 1790553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592149922145560