Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq15651 145 6e-30 seq18541 116 3e-21 seq15318 116 3e-21 seq22428 109 4e-19 seq21428 91.5 1e-13 >seq15651 Length=9404055 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| ||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 6566932 TAGACCGGTGAGGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGG 6566991 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| Sbjct 6566992 CACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCAC 6567051 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||| || ||||| || | || ||| |||||||| || ||||| || Sbjct 6567052 CACATAGAACTGGCAGAGGGCGTGACACGGAGGCAGCGCCATCAG 6567096 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 6570632 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 6570691 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| |||| |||||||| ||| || |||||||| Sbjct 6570692 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCGTC 6570751 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || || ||||| | ||||||||| || Sbjct 6570752 CCAGATTTTGACTCCCTTGGAAGACAGTTCTTTAGCGTTTGTGGATCC 6570799 >seq18541 Length=1048218 Score = 116 bits (128), Expect = 3e-21 Identities = 184/260 (71%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || | || || ||||| || || ||||| | Sbjct 494075 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTACTAAGAACTACATTAATTCTGTCCTT 494134 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| ||||||||| || ||||||||||| ||||| |||||||| ||||||| || Sbjct 494135 TAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 494194 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | ||||| | | || | || || || || | Sbjct 494195 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTTGGAAATACTTGAATTCATTCC 494254 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 ||| || ||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 494255 TGAGT------GGGGCCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GAC 494307 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 494308 ACAGCGACGATGCAGTTTAG 494327 >seq15318 Length=11437517 Score = 116 bits (128), Expect = 3e-21 Identities = 162/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 112114 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 112173 || || ||||| || || ||||| | | ||||| ||||||||| || ||||||||||| Sbjct 10882438 CTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGAATGGAGAACCAG 10882379 Query 112174 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAG 112233 ||||| |||||||| ||||||| ||||| || ||| |||||||| || | ||||| Sbjct 10882378 GTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 10882319 Query 112234 GCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTG 112293 | | || | || || || || | ||| || |||| ||||| || ||||| Sbjct 10882318 TTTTGGAAATACTTGAATTCATTCCTGAGT------GGGGGCCAGGGCAGGTCCCCGTTC 10882265 Query 112294 TTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337 || || ||||||||| ||||| |||| || | ||| | ||| || Sbjct 10882264 TTGCCAATGCCCATGTTCTGG-GACACAGCGATGATGCAGTTTAG 10882221 >seq22428 Length=10093839 Score = 109 bits (120), Expect = 4e-19 Identities = 181/259 (70%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| | || || || || || || || || ||||| || || ||||| | Sbjct 7166811 ATGAGCTCCTTGTGTAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 7166870 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| ||||||||| || ||||||||||| ||||| |||| ||| ||| ||| || Sbjct 7166871 TAAAGGTCGATTCTTTTCAGGAATGGAGAACCAGGTCTTCCTACTCATAATCGCCAGATT 7166930 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || | ||||| | | || | || || || || | Sbjct 7166931 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 7166990 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 ||| || |||| ||||| || || || || || ||||||||| ||||| ||| Sbjct 7166991 GAGT------GGGGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTCTGG-GACA 7167043 Query 112319 CGGCCACGATACCGTTCAG 112337 | || || || | ||| || Sbjct 7167044 CAGCGACAATGCAGTTTAG 7167062 >seq21428 Length=20122155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || || || ||||| || || ||||| | | ||||| ||||||||| || Sbjct 2439326 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGGA 2439267 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2439266 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 2439219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408505355171447