Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq21428 111 4e-20 seq15174 111 4e-20 seq14574 105 2e-18 >seq21428 Length=20122155 Score = 111 bits (122), Expect = 4e-20 Identities = 183/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||||||||| || ||| ||||||| | || || || || || || | | || ||||| Sbjct 2235841 TGGATGTTACGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCCAAACATTTTATAGATGT 2235900 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 2235901 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 2235960 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || ||||||| ||||||| ||| | |||||||| Sbjct 2235961 TGGCAAAGAAAAG---TTTGAAGTAAAAAAAGGTGATTGGATTGCGCAGCTCATTTGTGA 2236017 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| |||| || || ||| | || || || | ||||||||||| Sbjct 2236018 ATGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTTTTGGATGACACTGAAAGGGGTTC 2236077 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 | ||| ||||| || || |||| Sbjct 2236078 AGGAGGTTTTGGTTCCACTGGAA 2236100 >seq15174 Length=1580434 Score = 111 bits (122), Expect = 4e-20 Identities = 183/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||||||||| || ||| ||||||| | || || || || || || | | || ||||| Sbjct 203702 TGGATGTTACGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCCAAACATTTTATAGATGT 203761 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || |||||||| || ||| ||| | ||| || || ||||||||||| | |||||||| Sbjct 203762 AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTT 203821 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || ||||||| ||||||| ||| | |||||||| Sbjct 203822 TGGCAAAGAAAAG---TTTGAAGTAAAAAAAGGTGATCGGATTGCGCAGCTTATTTGTGA 203878 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | | ||| |||| || || ||| | || || || | ||||| ||||| Sbjct 203879 ACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTTTTGGATGACACTGAAAGAGGTTC 203938 Query 1202 TGCAGGATTTGGGTCTACCGGAA 1224 ||||| ||||| || || |||| Sbjct 203939 AGCAGGTTTTGGTTCCACTGGAA 203961 >seq14574 Length=3519100 Score = 105 bits (116), Expect = 2e-18 Identities = 186/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| || || || || || || | | | Sbjct 1299468 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACATTCTGGCTTGGCTGCCAAACATTTTA 1299409 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 1299408 CAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 1299349 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || ||||||| ||||||| ||| | | Sbjct 1299348 TTAATTTTGGCAAAGAAAAG---TTTGAAGTAAAAAAAGGTGATCGGATTGCGCAGCTCA 1299292 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194 |||||||| | | ||| |||| || || ||| | || || || | | || Sbjct 1299291 TTTGTGAATGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTTTTGGATGACACTGGAA 1299232 Query 1195 GGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||| | ||| ||||| || || |||| Sbjct 1299231 GGGGTTCAGGAGGTTTTGGTTCCACTGGAA 1299202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138644481783084