Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20429 91.5 1e-13 seq1 86.0 5e-12 seq15718 82.4 6e-11 >seq20429 Length=9870158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||||| || || ||| ||| || || || ||||| ||||| Sbjct 2401385 GCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2401326 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| ||||| | || Sbjct 2401325 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 2401266 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 2401265 GATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGAC 2401206 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 ||| | || || || || ||||||| || || ||||| |||||||| || ||| Sbjct 2401205 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTGTCTGT 2401151 >seq1 Length=29265399 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| |||| ||| || || |||||| || || ||||| ||||| Sbjct 23783156 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 23783097 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| |||||| || ||||| || || ||||| || || | |||| Sbjct 23783096 AGAGTGCGCCCATCTTCCACCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 23783037 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| ||| ||| | | | || | ||||||| Sbjct 23783036 TC-CCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 23782978 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || || ||||| || ||||| Sbjct 23782977 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 23782931 >seq15718 Length=2773767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | | | || Sbjct 1504878 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 1504937 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 1504938 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1504997 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || |||| | || || || Sbjct 1504998 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATAGT 1505057 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||||||||||||||||| Sbjct 1505058 CTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 1505090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380832958703097