Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7113 181 2e-40 seq16296 141 2e-28 seq14041 95.1 2e-14 seq4446 93.3 8e-14 >seq7113 Length=4733570 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 3388681 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 3388622 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || ||| | ||||| || ||||| || | |||||| |||||| Sbjct 3388621 TCCCGGAGGAGGCCGGCAGTACTCGACAGCCCGGCGTTCTCGGCCTTGAGTGTCTTCACC 3388562 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| || ||||| |||| Sbjct 3388561 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCAGC 3388502 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 3388501 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 3388442 Query 241625 GAC 241627 ||| Sbjct 3388441 GAC 3388439 >seq16296 Length=2251693 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1162162 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 1162103 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 1162102 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1162043 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | ||| || || || | |||||| ||||||||| Sbjct 1162042 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGATTACGCAGCCGCTTACGCTCCGCCTTG 1161983 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1161982 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1161950 >seq14041 Length=6761596 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || || |||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 1428909 GTATATTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 1428968 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 1428969 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTTCCTGTCTCTGTCTG 1429027 Query 213647 GGAC 213650 ||| Sbjct 1429028 AGAC 1429031 >seq4446 Length=19542914 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 9773171 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 9773112 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 9773111 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 9773052 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 9773051 ATGGGGGAC 9773043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931270352277760