Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq15718 113 8e-20 seq15540 93.3 8e-14 >seq15718 Length=2773767 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| || Sbjct 1504854 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 1504913 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| ||| || ||||||||||| | ||| || || Sbjct 1504914 GTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 1504973 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 1504974 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 1505033 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | ||||| || || || || || | ||||| | || |||||||| || Sbjct 1505034 GGGTTCAACCTTGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTT 1505093 >seq15540 Length=10794444 Score = 93.3 bits (102), Expect = 8e-14 Identities = 120/165 (73%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || ||||||||||| | ||| || ||||||||||| |||||||| || Sbjct 10655429 TCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCAGGTGGAATTCCTTCCCTA 10655488 Query 171975 TCTTGTATTTTATTTTTTACATT-----AGTT--ATAGTATCTGACGATTCTACTTCTAG 172027 || || || || |||||||| || | || ||||| || | ||| || | || Sbjct 10655489 TCCTGGATCTTGGCCTTTACATTTTCTCAGATACATTGTATCCGAGGGTTCAACCTGGAG 10655548 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| ||||| || || || | | ||| ||||| |||||||| || Sbjct 10655549 AGTGATGGTCTTCCCTGTAAGGGATTTTATGAAAATCTGCATCTT 10655593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904880989246200