Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq20429 150 1e-31 seq15374 122 6e-23 seq16418 118 7e-22 seq1558 111 1e-19 seq2224 93.3 3e-14 seq15718 87.8 1e-12 >seq20429 Length=9870158 Score = 150 bits (166), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 2401369 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2401310 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | ||||| || | || | ||||||||||| Sbjct 2401309 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCT 2401250 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | || ||| |||||| || | ||| |||| Sbjct 2401249 TGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGG 2401192 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||| |||||||| |||||||||||||| Sbjct 2401191 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2401158 >seq15374 Length=4994092 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | ||| ||| ||||| ||||| ||||| || || ||||| |||| Sbjct 172896 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATC 172837 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || |||||||| | || | ||| ||||| || Sbjct 172836 TTCCAGCTGCTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATCCCTTCCTTATC 172777 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||| || || || || | || ||| ||| || || | ||| ||| Sbjct 172776 CTGGATCTTGGCTTTCAC--ATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 172719 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| ||||| || ||||| Sbjct 172718 GTCTTGCCAGTCAGGGTCTTCACAAAAATTTGCAT 172684 >seq16418 Length=1794168 Score = 118 bits (130), Expect = 7e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||| |||| | |||| ||| ||| ||||||| ||||| || || || | |||| Sbjct 1338122 AGCACCGGGTGCACGGTGGACTCTTTCCGAATGTTGTAGTCGGAAAGAGTGTGGCCATCC 1338063 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| | || || || || ||||| || ||||||| | || | ||||||||||| Sbjct 1338062 TCCAGCCGTTTGCCTGCAAATATCAGACGCGGCTGGTCGGGGGG-ATGCCCTCCTTGTCT 1338004 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||||| | || | ||| ||| ||||| |||| ||| |||||| Sbjct 1338003 TGGATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGTTCGACCTCAAGGGTGATGGTC 1337944 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| ||||| |||||||| Sbjct 1337943 TTGCCCGTCAGGGTCTTCACAAA-ATCTGCAT 1337913 >seq1558 Length=6673444 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 2790703 CCACCCCTCAAGCGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 2790644 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||||| |||| ||||| ||||| | || ||||| || || ||||| || | || Sbjct 2790643 AGAGTGCGCCCATCTTCCAGCTGCTTGCATGCAAAGATGAGCCGCTGCTGATCAGGGGGG 2790584 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || || || || || || | | ||| ||| | Sbjct 2790583 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTTGATGGTGTTGCTGGGCTCCA 2790526 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||| ||||| Sbjct 2790525 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTTGCAT 2790477 >seq2224 Length=17281721 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||||||||||| | ||| ||| || || ||||| ||||| || Sbjct 757866 CCACCCCTCAAGCAGAGGACCAGGTGCAGGGTTGACTCTTTTTGGATGTTGTAGTCAGAA 757925 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| ||||| | ||| || || ||||| || || |||||||| | || Sbjct 757926 AGAGCGTGCCCATCTTCCAGCTACTTACCTGCAAAGATGAGCCGCTGCTGGTCAGGAGGG 757985 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 ||| ||||| || | || || || | || || || | ||| ||| ||| | Sbjct 757986 GTCCCTTCCTTATCCTGGATCTTGGCCTT--CTCATTCTCAATGGTGTCACTGGGCTCCA 758043 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || ||||||| || || |||||||| || || |||||||| Sbjct 758044 CCTCCAGGGCGATGGTCTCGCCAGTCAGGGTCTTGACGAAAATCTGCAT 758092 >seq15718 Length=2773767 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| ||| |||||| |||||||| ||||| || | | | || Sbjct 1504876 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA 1504935 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || || ||||||| |||||| || | || | || ||||| Sbjct 1504936 TCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 1504995 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || | | || || Sbjct 1504996 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATA 1505055 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGG 34985 ||||| || || ||||| |||||||| ||||||||| | |||| Sbjct 1505056 GTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATGTTGGTGG 1505098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325603334121641