Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq14740 86.0 6e-12 seq10777 86.0 6e-12 seq1448 86.0 6e-12 >seq14740 Length=2861497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 21104 GAAGACAAAGACTATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATT 21163 || || ||| | ||| || ||||| ||||| || | || |||||| | || | ||| Sbjct 10251 GATGAGAAATATTATTCATCCAGCATATGGGGACCAACATGTGATGGCCTTGACCGGATT 10192 Query 21164 GTTAAGCGGTGTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATG 21223 ||| |||| ||||| ||||| || | || ||||| |||||| | | |||||||||||| Sbjct 10191 GTTGAGCGCTGTGACCTGCCCGAAATGCATGTGGGTGACTGGATGCTCTTTGAAAACATG 10132 Query 21224 GGCGCTTACA 21233 || ||||||| Sbjct 10131 GGTGCTTACA 10122 >seq10777 Length=4013320 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 ||||||||||| | |||||||| || ||||| ||||| ||||| | | | | ||| Sbjct 3349566 TTTATGTATTACATGAATGATGGAGTATATGGATCATTTAATTGCATCCTTTATGATCAT 3349625 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAA---AACGCCTTGAAGACAAAGACTATGTT 21121 || | | ||| | |||| ||||| | || || || || ||| | ||| Sbjct 3349626 GCGCACGTAAAGCCCCTTCTGCA-AAAGAGACCTAAAGCA--GATGAGAAATATTATTCA 3349682 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | || | ||| || ||| ||||| ||| Sbjct 3349683 TCCAGCATATGGGGACCAACATGTGATGGCCTTGACCGGATTTTTGAGCACTGTGACCTG 3349742 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || | || ||||| |||||| | | |||||||||||| || |||||| Sbjct 3349743 CCCGAAATGCATGTGGGTGACTGGATGCTCTTTGAAAACATGAGCACTTACA 3349794 >seq1448 Length=227310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 21104 GAAGACAAAGACTATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATT 21163 || || ||| | ||| || ||||| ||||| || | || |||||| | || | ||| Sbjct 1862 GATGAGAAATATTATTCATCCAGCATATGGGGACCAACATGTGATGGCCTTGACCGGATT 1921 Query 21164 GTTAAGCGGTGTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATG 21223 ||| |||| ||||| ||||| || | || ||||| |||||| | | |||||||||||| Sbjct 1922 GTTGAGCGCTGTGACCTGCCCGAAATGCATGTGGGTGACTGGATGCTCTTTGAAAACATG 1981 Query 21224 GGCGCTTACA 21233 || ||||||| Sbjct 1982 GGTGCTTACA 1991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463415001821520