Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq14096 100 5e-16 seq21428 86.0 1e-11 >seq14096 Length=10606831 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| | |||||||||| | || || || || || |||||||| || || ||| Sbjct 8595279 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACTGTGTTTTTTATCCTGAGG 8595220 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || || || || ||| || || || ||||||||||| | ||| |||||||| || Sbjct 8595219 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 8595160 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | ||| | || ||||| ||| ||||||| || || Sbjct 8595159 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 8595125 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 ||||||||||| || ||| ||||||| ||||||||||| |||||||| || ||||| Sbjct 8593234 GCATTTTTCGGAGCGCAGATGAATTCCTTTATCCATGTGATTATGTACTCATACTATGGG 8593175 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | | || | ||| | | || |||||||| | |||||||| || ||||| || || Sbjct 8593174 TTAACTGCATTTGGCCCATGGATTCAAAAGTATCTTTGGTGGAAACGATACCTGACCATG 8593115 Query 58661 ATGCAATTGGT 58671 |||| |||| Sbjct 8593114 TTGCAGCTGGT 8593104 >seq21428 Length=20122155 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48960 TCATCCAAAGAAGGTACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGA 49019 ||||||||| | |||||| |||||||||||| || ||| | |||| || Sbjct 2236062 TCATCCAAAACTTGAACTTCTTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGC 2236003 Query 49020 GCTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACA 49079 || || | |||||| || ||| | ||| | | |||||||| | || |||| Sbjct 2236002 GCAATCCAATCACCTTTTTTTACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACA 2235943 Query 49080 CCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTA 49139 || || || |||||||| ||| || || |||||||| ||||| |||||||||| || Sbjct 2235942 CCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATAAAATGTTTG 2235883 Query 49140 TAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCA 49181 ||| | || || | ||||||| ||| ||||| ||||| Sbjct 2235882 GCAGCCAAGCCAGAACATGGAGCTACTCTTCCGTAACATCCA 2235841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903156675187040